Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03050 1301 / 0 RHD7, ATCSLD3, KJK, CSLD3 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) AT5G16910 1286 / 0 ATCSLD2 cellulose-synthase like D2 (.1) AT4G38190 1108 / 0 ATCSLD4 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE D4, cellulose synthase like D4 (.1) AT2G33100 1074 / 0 ATCSLD1 CELLULOSE-SYNTHASE LIKE D1, cellulose synthase-like D1 (.1) AT1G02730 1049 / 0 SOS6, ATCSLD5 SALT OVERLY SENSITIVE 6, CELLULOSE SYNTHASE LIKE D5, cellulose synthase-like D5 (.1) AT1G32180 1003 / 0 ATCSLD6 CELLULOSE SYNTHASE LIKE D6, cellulose synthase-like D6 (.1) AT5G05170 666 / 0 IXR1, CEV1, ATH-B, ATCESA3, CESA3 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) AT2G25540 657 / 0 CESA10 cellulose synthase 10 (.1) AT5G17420 656 / 0 ATCESA7, MUR10, IRX3 MURUS 10, IRREGULAR XYLEM 3, CELLULOSE SYNTHASE CATALYTIC SUBUNIT 7, Cellulose synthase family protein (.1) AT4G18780 651 / 0 LEW2, IRX1, ATCESA8, CESA8 LEAF WILTING 2, IRREGULAR XYLEM 1, CELLULOSE SYNTHASE 8, cellulose synthase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030455 [exp] 1748 / 0 AT3G03050 1258 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Lus10030453 [exp] 1404 / 0 AT3G03050 1584 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Lus10009248 [exp] 1328 / 0 AT3G03050 1929 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Lus10038008 [exp] 1140 / 0 AT3G03050 1818 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Lus10013851 [exp] 1111 / 0 AT4G38190 1876 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE D4, cellulose synthase like D4 (.1) Lus10026610 [exp] 1096 / 0 AT3G03050 1028 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Lus10011736 [exp] 1095 / 0 AT2G33100 1508 / 0.0 CELLULOSE-SYNTHASE LIKE D1, cellulose synthase-like D1 (.1) Lus10022982 [exp] 1093 / 0 AT4G38190 1823 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE D4, cellulose synthase like D4 (.1) Lus10002134 [exp] 1088 / 0 AT3G03050 1473 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G082200 [exp] 1324 / 0 AT3G03050 1987 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Potri.019G049700 [exp] 1323 / 0 AT3G03050 2020 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Potri.001G136200 [exp] 1162 / 0 AT3G03050 1640 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Potri.003G097100 [exp] 1144 / 0 AT3G03050 1610 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Potri.009G170000 [exp] 1131 / 0 AT4G38190 1873 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE D4, cellulose synthase like D4 (.1) Potri.004G208800 [exp] 1126 / 0 AT4G38190 1835 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE D4, cellulose synthase like D4 (.1) Potri.014G125100 [exp] 1050 / 0 AT1G02730 1820 / 0.0 SALT OVERLY SENSITIVE 6, CELLULOSE SYNTHASE LIKE D5, cellulose synthase-like D5 (.1) Potri.002G200300 [exp] 1043 / 0 AT1G02730 1813 / 0.0 SALT OVERLY SENSITIVE 6, CELLULOSE SYNTHASE LIKE D5, cellulose synthase-like D5 (.1) Potri.003G177800 [exp] 1040 / 0 AT2G33100 1569 / 0.0 CELLULOSE-SYNTHASE LIKE D1, cellulose synthase-like D1 (.1) Potri.001G050200 [exp] 1008 / 0 AT2G33100 1576 / 0.0 CELLULOSE-SYNTHASE LIKE D1, cellulose synthase-like D1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF03552 [flax] [poplar] Cellulose_synt Cellulose synthase
Representative CDS sequence Show only first row Show all	>Lus10026609 pacid=23164262 polypeptide=Lus10026609 locus=Lus10026609.g ID=Lus10026609.BGIv1.0 annot-version=v1.0 ATGTCGATAAGCTCGGACGCGACGGATAATCAGCGGCCGCCGATTCCGCCGACGGTGACGTTCGGCCGGCGGACGTCTTCGGGGAGGTACGTGAGCTACT CGAGGGAGGATCTAGACAGTGAGATCGGGAGTAGCGACTTCATGAACTACACAGTTCACATCCCGCCGACTCCGGACAACCAGCCGATGGATCCTTCGAT TTCTCAGAAGGTCGAGGAGCAGTATGTTTCGAACTCGCTCTTCACCGGTGGGTTCAACAGTGTGACTCGAGCTCATTTGATGGATAAGGTTATTGAGTCT GAAGCGAATCATCCTCAGATGGCCGGTTCTAAGGGGTCTTGCTGTGCGATCCCTGGGTGTGATGCGAATGTGATGAGTGATGAGCGGGGATTGGATATTC TGCCGTGTGAGTGTGATTTTAAGATCTGTAGGGATTGTTATATTGATGCTGTGAAGACTGGAGGAGGAATCTGTCCGGGGTGTAAGGAGAGTTATAAGAA CACTGATCTTGATGAGGTTGCTGTTGATAAGGCGAGTCCTCTTCCTCTGCCTCCTCCTGGTGGTGGTGGTGGTGGTACTATGTCGAAGATGGAGAGGCGG CTTTCGTTGATGAAGTCGACCAAGTCTGTTCTTATGAGGAGCCAGACTGGTGAGTTTGATCACAATAGGTGGTTGTTTGAGACTAGAGGGACTTACGGTT ATGGTAATGCTATTTGGACGAATGATGGTGGGTTTGGTGATGGTAAGGGAGATGATGATGTTGGTGATCGTAAAGATTTGATGACCAAACCGTGGCGGCC TCTCACCAGGAAATTGAAGATTCCTGCTGCTGTCATCAGCCCGTACAGGCTTCTTGTGGTTATTCGAATTGTTGCTCTCGGCTTCTTTTTGTCATGGAGG GTGCAGAATCCAAACAAGGATGCAATGTGGCTATGGGGCTTATCTGAATGTCTTGAAGGAGAAATCCCGTTCTGCCGTAAACATGACATAGAGCCTAGGA ACCCGGAGTCTTATTTCAGCCTAAAGAGGGATCCTTACAAGAACAAAGTAAAAGGAGACTTCGTGAAGGATCGTAGGAGAATAAAGCGGGAGTACGATGA GTTCAAGGTCCGGATTAATGGTTTGCCTGATTCCATTCGTCGTCGTTCTGATGCATATCATGCAAGGGAAGAAATCAAAGCCTTGAAGCTTCAGAGGCAG AACAGGGAAGATGAAGCTGTTGAAGGTGTCAAGATCCCTAAAGCTACATGGATGGCTGATGGTACTCACTGGCCTGGAACTTGGATGGTTCCTGGACCTG AGCACTCCAAAGGAGACCATGCTGGCATTATTCAGGTGATGCTGAAACCTCCCAGCGATGAACAACTACTCGGTGGGAGCAGTGATGAAACTAAGATCTT AGACTTCAGTGAAGTTGATATTCGTCTGCCACTCCTTGTTTACGTTTCTCGTGAGAAGCGTCCCGGATATGATCATAACAAAAAGGCAGGGGCTATGAAC GCTCTTGTTCGTGCCTCAGCCATCATGTCCAATGGTCCGTTCATCCTCAATCTCGACTGTGACCACTACATTTACAACTCTCAGGCAATGAGGGAAGGAA TGTGCTTTATGATGGACCGAGGTGGCGACCGCCTTTGTTATGTTCAGTTCCCTCAGAGGTTCGAAGGCATCGACCCTTCTGACAGATATGCCAACCACAA CACCGTTTTCTTTGATGTCAACATGCGTGCTCTTGATGGACTTATGGGACCTGTGTATGTGGGGACCGGGTGCCTTTTCAGAAGGATTGCTTTGTATGGA TTCGATCCTCCTCGTGCGAAAGAGGACCATCCAGGCTGCTGCAGCTGTTGTTTCTCCAGCCGCAAGAAGAAATCCGCTGTTTCACACACTCCGGAAGAGA ACAGGTCGTTAAGGATGGGGGATTCTGATGACGAAGAGATGAACATGTCACTGCTGCCTAAGAGGTTTGGTAACTCAACCTTCCTAATCGACTCAATCCC GGTGGCCGAATTTCAAGGTCGTCCACTTGCAGATCACCCAGCTGTGAAGAATGGTCGTCGACCTGGTGCTCTTACCATTCCCCGTGAACTCCTGGATGCA ACCACTGTTGCAGAGGCAATCAATGTCATATCCTGCTGGTACGAGGACAAGACTGAATGGGGTCAACGAACCGGTTGGATCTACGGGTCAGTGACCGAGG ACGTCGTAACCGGTTACAGAATGCATAACAGAGGATGGAAATCAGTCTACTGCGTCACGAAACGTGATGCCTTCCGTGGCACGGCACCCATAAACTTGAC AGACAGGCTTCACCAAGTGCTCCGTTGGGCAACTGGATCGGTCGAAATCTTTTTCTCTCGAAACAACGCCCTCTTAGCCAGCTCAAGGATGAAGTTTCTC CAACGTATAGCTTACCTCAACGTCGGCATATACCCCTTTACATCAGTTTTCCTCATCGTCTACTGCTTCCTCCCGGCACTCTCCTTGTTCTCCGGTCAAT TCATTGTGTCGAGTCTCAACGTGACATTCCTTGTCTACCTCCTCATCATCACAATCACCCTATGCATGCTGGCAATTCTCGAAATCAAATGGTCAGGAAT CGAGCTGGAAGAATGGTGGAGGAACGAGCAGTTCTGGCTTATTGGAGGCACCAGCGCTCACCTTGCAGCAGTCATCCAAGGTCTTCTCAAGGTTGTGGCC GGTATCGAAATCTCCTTCACTCTCACTTCAAAATCAGGAGGAGACGATGTGGACGACGAGTTTGCTGATCTCTACATAGTGAAGTGGACTTCGCTCATGA TCCCGCCAATCGTGATCATGATGGTGAACTTGATCGGGATCGCTGTCGGGGTTAGCAGGACGATATACAGTGTGATACCGCAGTGGAGTAGGCTTTTGGG AGGGGTGTTCTTCAGTTTCTGGGTGCTGGCTCATCTCTATCCATTTGCCAAGGGGCTCATGGGAAGGAGAGGAAGGACTCCTACTATAGTCTTTGTGTGG TCTGGACTTGTTGCCATTACCATTTCTTTGCTGTGGGTTGCTATCAATCCTCCTTCTACTACTAACCAAATCGGGGGATCGTTCCAGTTCCCTTAA
AA sequence Show only first row Show all	>Lus10026609 pacid=23164262 polypeptide=Lus10026609 locus=Lus10026609.g ID=Lus10026609.BGIv1.0 annot-version=v1.0 MSISSDATDNQRPPIPPTVTFGRRTSSGRYVSYSREDLDSEIGSSDFMNYTVHIPPTPDNQPMDPSISQKVEEQYVSNSLFTGGFNSVTRAHLMDKVIES EANHPQMAGSKGSCCAIPGCDANVMSDERGLDILPCECDFKICRDCYIDAVKTGGGICPGCKESYKNTDLDEVAVDKASPLPLPPPGGGGGGTMSKMERR LSLMKSTKSVLMRSQTGEFDHNRWLFETRGTYGYGNAIWTNDGGFGDGKGDDDVGDRKDLMTKPWRPLTRKLKIPAAVISPYRLLVVIRIVALGFFLSWR VQNPNKDAMWLWGLSECLEGEIPFCRKHDIEPRNPESYFSLKRDPYKNKVKGDFVKDRRRIKREYDEFKVRINGLPDSIRRRSDAYHAREEIKALKLQRQ NREDEAVEGVKIPKATWMADGTHWPGTWMVPGPEHSKGDHAGIIQVMLKPPSDEQLLGGSSDETKILDFSEVDIRLPLLVYVSREKRPGYDHNKKAGAMN ALVRASAIMSNGPFILNLDCDHYIYNSQAMREGMCFMMDRGGDRLCYVQFPQRFEGIDPSDRYANHNTVFFDVNMRALDGLMGPVYVGTGCLFRRIALYG FDPPRAKEDHPGCCSCCFSSRKKKSAVSHTPEENRSLRMGDSDDEEMNMSLLPKRFGNSTFLIDSIPVAEFQGRPLADHPAVKNGRRPGALTIPRELLDA TTVAEAINVISCWYEDKTEWGQRTGWIYGSVTEDVVTGYRMHNRGWKSVYCVTKRDAFRGTAPINLTDRLHQVLRWATGSVEIFFSRNNALLASSRMKFL QRIAYLNVGIYPFTSVFLIVYCFLPALSLFSGQFIVSSLNVTFLVYLLIITITLCMLAILEIKWSGIELEEWWRNEQFWLIGGTSAHLAAVIQGLLKVVA GIEISFTLTSKSGGDDVDDEFADLYIVKWTSLMIPPIVIMMVNLIGIAVGVSRTIYSVIPQWSRLLGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVFVW SGLVAITISLLWVAINPPSTTNQIGGSFQFP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G03050		RHD7, ATCSLD3, ...	ROOT HAIR DEFECTIVE 7, KOJAK, ...		Lus10026609 [exp]	0	1
AT4G08950		EXO	EXORDIUM, Phosphate-responsive...		Lus10017050 [exp]	5.5	0.8743
AT2G37980			O-fucosyltransferase family pr...		Lus10017190 [exp]	7.0	0.8765
AT3G19680			Protein of unknown function (D...		Lus10012451 [exp]	9.4	0.8096
AT4G08950		EXO	EXORDIUM, Phosphate-responsive...		Lus10021370 [exp]	11.0	0.8443
AT1G70090		GATL9, LGT8	GALACTURONOSYLTRANSFERASE-LIKE...		Lus10010727 [exp]	13.3	0.8695
AT1G70090		GATL9, LGT8	GALACTURONOSYLTRANSFERASE-LIKE...		Lus10029215 [exp]	14.5	0.8140
AT4G17140			pleckstrin homology (PH) domai...		Lus10003381 [exp]	14.7	0.8376
AT3G24550		ATPERK1	proline-rich extensin-like rec...		Lus10023645 [exp]	15.0	0.8451
AT5G13640		PDAT1, ATPDAT	PHOSPHOLIPID:DIACYLGLYCEROL AC...		Lus10021564 [exp]	16.1	0.8054
AT4G24110			unknown protein		Lus10017328 [exp]	17.7	0.8239

Compare expression of checked genes

Lus10026609 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.