Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03050 987 / 0 RHD7, ATCSLD3, KJK, CSLD3 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) AT5G16910 984 / 0 ATCSLD2 cellulose-synthase like D2 (.1) AT4G38190 861 / 0 ATCSLD4 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE D4, cellulose synthase like D4 (.1) AT2G33100 847 / 0 ATCSLD1 CELLULOSE-SYNTHASE LIKE D1, cellulose synthase-like D1 (.1) AT1G02730 845 / 0 SOS6, ATCSLD5 SALT OVERLY SENSITIVE 6, CELLULOSE SYNTHASE LIKE D5, cellulose synthase-like D5 (.1) AT5G05170 796 / 0 IXR1, CEV1, ATH-B, ATCESA3, CESA3 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) AT5G17420 788 / 0 ATCESA7, MUR10, IRX3 MURUS 10, IRREGULAR XYLEM 3, CELLULOSE SYNTHASE CATALYTIC SUBUNIT 7, Cellulose synthase family protein (.1) AT2G25540 782 / 0 CESA10 cellulose synthase 10 (.1) AT4G18780 780 / 0 LEW2, IRX1, ATCESA8, CESA8 LEAF WILTING 2, IRREGULAR XYLEM 1, CELLULOSE SYNTHASE 8, cellulose synthase family protein (.1) AT5G64740 773 / 0 PRC1, IXR2, E112, CESA6 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030453 [exp] 1073 / 0 AT3G03050 1584 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Lus10030455 [exp] 1072 / 0 AT3G03050 1258 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Lus10026609 [exp] 1069 / 0 AT3G03050 1326 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Lus10009248 [exp] 1006 / 0 AT3G03050 1929 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Lus10013851 [exp] 864 / 0 AT4G38190 1876 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE D4, cellulose synthase like D4 (.1) Lus10002134 [exp] 853 / 0 AT3G03050 1473 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Lus10022982 [exp] 851 / 0 AT4G38190 1823 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE D4, cellulose synthase like D4 (.1) Lus10010024 [exp] 842 / 0 AT1G02730 1806 / 0.0 SALT OVERLY SENSITIVE 6, CELLULOSE SYNTHASE LIKE D5, cellulose synthase-like D5 (.1) Lus10026568 [exp] 836 / 0 AT4G38190 1868 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE D4, cellulose synthase like D4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G082200 [exp] 1031 / 0 AT3G03050 1987 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Potri.019G049700 [exp] 1028 / 0 AT3G03050 2020 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Potri.001G136200 [exp] 889 / 0 AT3G03050 1640 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Potri.009G170000 [exp] 880 / 0 AT4G38190 1873 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE D4, cellulose synthase like D4 (.1) Potri.003G097100 [exp] 878 / 0 AT3G03050 1610 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Potri.004G208800 [exp] 873 / 0 AT4G38190 1835 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE D4, cellulose synthase like D4 (.1) Potri.014G125100 [exp] 837 / 0 AT1G02730 1820 / 0.0 SALT OVERLY SENSITIVE 6, CELLULOSE SYNTHASE LIKE D5, cellulose synthase-like D5 (.1) Potri.002G200300 [exp] 826 / 0 AT1G02730 1813 / 0.0 SALT OVERLY SENSITIVE 6, CELLULOSE SYNTHASE LIKE D5, cellulose synthase-like D5 (.1) Potri.003G177800 [exp] 822 / 0 AT2G33100 1569 / 0.0 CELLULOSE-SYNTHASE LIKE D1, cellulose synthase-like D1 (.1) Potri.001G050200 [exp] 814 / 0 AT2G33100 1576 / 0.0 CELLULOSE-SYNTHASE LIKE D1, cellulose synthase-like D1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF03552 [flax] [poplar] Cellulose_synt Cellulose synthase
Representative CDS sequence Show only first row Show all	>Lus10026610 pacid=23164417 polypeptide=Lus10026610 locus=Lus10026610.g ID=Lus10026610.BGIv1.0 annot-version=v1.0 ATGGCGTCCAAGTCGTTCAAAGCTAGTAGATCAAACGCCTCGATGAGCTCCGACGCGGCGGACGCGCAGCAGCAGCGGGTGATGGTCCCGTCGACGGTGA CGTTCGGCCGGAGAACATCTTCGGGGAGGTATGTCAGCTACTCGAAGGAGGATCTAGACAGTGAGATAGGGAGCAGCGACTTCATGAATTACACAGTCCA CATCCCGCCGACTCCGGACAACCAGCCGATGGATCCTTCGATTTCTCAGAAGGTCGAGGAGCAGTATGTTTCGAACTCGCTCTTCACCGGTGGGTTCAAC AGTGTGACTCGAGCTCATTTGATGGATAAGGTTATTGAGTCTGAAGCGAATCATCCTCAGATGGCAGGTTCTAAGGGCTCTTGCTGTGCGATCCCTGGGT GTGATGCTAACGTGATGAGTGACGGGCGAGGGCTGGATATTCTTCCATGTGAGTGTGATTTTAAGATTTGTAGGGATTGTTATATTGATGCTGTGAAGAT TGGGGGAGGAATCTGTCCCGGGTGTAAGGAGAGTTACAAGAACACTGATCTTGATGAGGTTGCTGTTGATAAGTCGAGGCCTCTTCCTCTGCCTCCTCCT GGTGGTGGTGGTGGTACTATGTCGAAGATGGAGAGGCGGCTTTCGTTGATGAAATCGACTAAGTCTGTTCTTATGAGGAGCCAGACTGGCGAGTTTGATC ACAATAGGTGGCTGTTTGAGACTAGGGGGACTTACGGTTATGGTAATGCTATATGGACGAATGATGGTGGGTTTGGTGATGGGAAGGGAGATGATGATGT TGGTGATCGTAAAGATTTGATGACCAAAACGTGGCGGCCTCTAACCAGGAAATTGAAGATCCCTGCTGCTGTTATCAGCCCATATAGGCTTCTTGTTCTT ATTCGAATTGTAGCTCTAGGCTTGTTTTTGTCATGGAGAGTGCAGAATCCCAACAGGGATGCAATGTGGCTATGGGGGATGTCAGTTGTTTGTGAACTCT GGTTTGCTTTCTCTTGGCTTCTTGACCAGCTTCCCAAGCTGTGCCCGATTAACCGTGCGACTGATCTGAATGTCTTGAAGGAGAAATTCGAAACACCCTC ACCACTGAACCCAACAGGAAAATCTGATCTTCCAGGGATTGATATATTCGTCTCCACTGCTGATCCTGAGAAAGAACCACCTCTCGTCACTGCAAACACC ATCCTGTCAATCTTAGCAGCGGACTACCCTTGTGAAAAGCTTGCTTGTTATGTATCGGATGACGGTGGTGCACTTCTGACCTTTGAGGCCATGGCTGAAG CTGCAAGTTTTTCCAACATATGGGTACCCTTTTGCCGTAAACACGACATAGAGCCTAGGAACCCGGAGTCTTACTTCAGTCTAAAGAGGGATCCTTACAA GAACAAAGTAAGAGCAGACTTTGTCAAGGATCGCAGGCGAATCAAACGGGAGTACGACGAGTTCAAGGTGATGCTGAAACCTCCAAGCGACGAACCACTA CTGGGCGGGAGCAGTGATGAAACTAAGATCTTAGACTTCAGTGAAGTTGATATTCGTCTGCCACTCCTTGTTTACGTTTCTCGTGAGAAGCGTCCCGGAT ATGATCATAACAAGAAGGCAGGGGCTATGAACGCTCTTGTTCGTGCCTCAGCTATCATGTCTAATGGTCCTTTCATCCTCAATCTCGACTGTGACCACTA CATTTACAACTCTCAGGCAATGAGGGAAGGAATGTGCTTTATGATGGACCGAGGTGGCGACCGCCTTTGCTACGTCCAGTTCCCTCAGAGGTTCGAAGGC ATTGACCCTTCGGACCGATACGCCAACCACAACACGGTCTTCTTCGACGTCAACATGCGTGCCCTGGACGGGCTCATGGGACCGGTCTATGTCGGAACCG GATGCCTCTTCAGAAGAATCGCATTGTACGGATTCGACCCTCCTCGAGCCAAAGATGACCACCCCGGGTGCTGCAGCTGTTGCTTCGGGAAGAAGAAATC TTCATCCTCGGTCTCGAACTCCCCCGAAGAGGACGACAACAACAACTCCTTCCGAATGGGAGACTCAGACAACGACGAAATGAACATGTCGCTTCTTCCC AAGAGATTCGGTAACTCGACATTCCTAATTGATTCGATTCCCGTGGCTGAGTTCCAAGGCCGTCCACTGGCTGATCACCCGGCTGTTAAGAATGGTCGTC GACCGGGAGCTCTCACCATCCCTCGAGAGCTCCTTGATGCATCGACAGTCGCTGAGGCAATCAACGTGATATCCTGCTGGTATGAGGATAAAACCGAATG GGGTCAACGAACCGGTTGGATCTACGGGTCAGTGACTGAGGACGTCGTAACCGGTTACAGAATGCACAACAGAGGATGGAAATCAGTCTACTGCGTCACA AAACGAGATGCCTTCCGTGGCACGGCACCCATAAACTTGACGGACAGGCTTCACCAGGTGCTCCGTTGGGCTACCGGATCGGTTGAAATCTTCTTCTCTC GGAACAACGCCCTCTTAGCCAGCTCGAGAATGAAGTTCCTGCAACGTATAGCGTACCTCAACGTCGGAATCTACCCGTTCACCTCGGTCTTCCTCATCGT CTACTGCTTCCTCCCGGCGCTCTCCTTGTTCTCCGGCCAATTCATCGTCTCCAGCCTCAACGAATCGAGCGGAATCGAGCTCGAAGAATGGTGGAGGAAC GAACAGTTCTGGCTAATCGGCGGCACCAGCGCCCACTTAGCAGCAGTCATCCAGGGCTTACTCAAAGTCGTGGCCGGTATCGAAATCTCCTTCACCCTCA CTTCGAAATCAGGAGGAGACGACGTGGACGACGAGTTTGCTGATCTCTACATAGTGAAGTGGACGTCTCTGATGATCCCGCCAATCGTGATCATGATGGT GAACTTGATCGGGATCGCTGTTGGGGTTAGCAGGACGATTTACAGCGTGATACCGCAGTGGAGTAGGCTTCTGGGAGGTGTGTTCTTCAGTTTCTGGGTT TTGGCTCATCTCTACCCGTTTGCTAAGGGGCTCATGGGGAGGCGGGGGAGGACTCCGACGATCGTGTTTGTGTGGTCGGGGCTCGTTGCTATTACGATCT CGTTGCTCTGGGTCGCGATCAATCCTCCGTCGACTACTAACCAGATCGGGGGATCGTTTCAGTTCCCTTGA
AA sequence Show only first row Show all	>Lus10026610 pacid=23164417 polypeptide=Lus10026610 locus=Lus10026610.g ID=Lus10026610.BGIv1.0 annot-version=v1.0 MASKSFKASRSNASMSSDAADAQQQRVMVPSTVTFGRRTSSGRYVSYSKEDLDSEIGSSDFMNYTVHIPPTPDNQPMDPSISQKVEEQYVSNSLFTGGFN SVTRAHLMDKVIESEANHPQMAGSKGSCCAIPGCDANVMSDGRGLDILPCECDFKICRDCYIDAVKIGGGICPGCKESYKNTDLDEVAVDKSRPLPLPPP GGGGGTMSKMERRLSLMKSTKSVLMRSQTGEFDHNRWLFETRGTYGYGNAIWTNDGGFGDGKGDDDVGDRKDLMTKTWRPLTRKLKIPAAVISPYRLLVL IRIVALGLFLSWRVQNPNRDAMWLWGMSVVCELWFAFSWLLDQLPKLCPINRATDLNVLKEKFETPSPLNPTGKSDLPGIDIFVSTADPEKEPPLVTANT ILSILAADYPCEKLACYVSDDGGALLTFEAMAEAASFSNIWVPFCRKHDIEPRNPESYFSLKRDPYKNKVRADFVKDRRRIKREYDEFKVMLKPPSDEPL LGGSSDETKILDFSEVDIRLPLLVYVSREKRPGYDHNKKAGAMNALVRASAIMSNGPFILNLDCDHYIYNSQAMREGMCFMMDRGGDRLCYVQFPQRFEG IDPSDRYANHNTVFFDVNMRALDGLMGPVYVGTGCLFRRIALYGFDPPRAKDDHPGCCSCCFGKKKSSSSVSNSPEEDDNNNSFRMGDSDNDEMNMSLLP KRFGNSTFLIDSIPVAEFQGRPLADHPAVKNGRRPGALTIPRELLDASTVAEAINVISCWYEDKTEWGQRTGWIYGSVTEDVVTGYRMHNRGWKSVYCVT KRDAFRGTAPINLTDRLHQVLRWATGSVEIFFSRNNALLASSRMKFLQRIAYLNVGIYPFTSVFLIVYCFLPALSLFSGQFIVSSLNESSGIELEEWWRN EQFWLIGGTSAHLAAVIQGLLKVVAGIEISFTLTSKSGGDDVDDEFADLYIVKWTSLMIPPIVIMMVNLIGIAVGVSRTIYSVIPQWSRLLGGVFFSFWV LAHLYPFAKGLMGRRGRTPTIVFVWSGLVAITISLLWVAINPPSTTNQIGGSFQFP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G03050		RHD7, ATCSLD3, ...	ROOT HAIR DEFECTIVE 7, KOJAK, ...		Lus10026610 [exp]	0	1
AT4G12110		ATSMO1-1, SMO1-...	sterol-4alpha-methyl oxidase 1...		Lus10032193 [exp]	5.5	0.8014
AT3G14310		ATPME3	pectin methylesterase 3 (.1)		Lus10003933 [exp]	6.5	0.7614
AT3G16060			ATP binding microtubule motor ...		Lus10037546 [exp]	8.2	0.8345
AT3G22440			FRIGIDA-like protein (.1)		Lus10006113 [exp]	8.5	0.7779
AT2G41350		AtAUG1, EMB2819	EMBRYO DEFECTIVE 2819, augmin ...		Lus10043401 [exp]	9.5	0.7968
AT4G09160			SEC14 cytosolic factor family ...		Lus10009458 [exp]	9.6	0.8318
AT2G05810			ARM repeat superfamily protein...		Lus10029996 [exp]	9.7	0.7626
AT1G69420			DHHC-type zinc finger family p...		Lus10037133 [exp]	10.8	0.8123
AT5G46910			Transcription factor jumonji (...		Lus10035385 [exp]	14.1	0.7507
AT2G05810			ARM repeat superfamily protein...		Lus10029995 [exp]	15.7	0.7463

Compare expression of checked genes

Lus10026610 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.