Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G03050 285 / 3e-96 SOLDAT10, EMB93 SINGLET OXYGEN-LINKED DEATH ACTIVATOR 10, EMBRYO DEFECTIVE 93, Mitochondrial transcription termination factor family protein (.1) AT2G34620 191 / 4e-59 Mitochondrial transcription termination factor family protein (.1) AT2G36000 141 / 1e-39 EMB3114 EMBRYO DEFECTIVE 3114, Mitochondrial transcription termination factor family protein (.1.2) AT3G18870 130 / 4e-36 Mitochondrial transcription termination factor family protein (.1) AT4G14605 107 / 4e-26 Mitochondrial transcription termination factor family protein (.1) AT1G78930 106 / 2e-25 Mitochondrial transcription termination factor family protein (.1) AT5G55580 92 / 2e-20 Mitochondrial transcription termination factor family protein (.1) AT2G21710 91 / 3e-20 EMB2219 embryo defective 2219, Mitochondrial transcription termination factor family protein (.1) AT4G38160 85 / 1e-18 PDE191 pigment defective 191, Mitochondrial transcription termination factor family protein (.1.2.3) AT2G44020 74 / 1e-14 Mitochondrial transcription termination factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030451 [exp] 587 / 0 AT2G03050 283 / 3e-95 SINGLET OXYGEN-LINKED DEATH ACTIVATOR 10, EMBRYO DEFECTIVE 93, Mitochondrial transcription termination factor family protein (.1) Lus10032120 [exp] 166 / 4e-49 AT2G34620 300 / 2e-101 Mitochondrial transcription termination factor family protein (.1) Lus10029422 [exp] 165 / 1e-48 AT2G36000 294 / 3e-98 EMBRYO DEFECTIVE 3114, Mitochondrial transcription termination factor family protein (.1.2) Lus10021297 [exp] 164 / 3e-48 AT2G36000 264 / 8e-87 EMBRYO DEFECTIVE 3114, Mitochondrial transcription termination factor family protein (.1.2) Lus10004219 [exp] 163 / 8e-48 AT2G36000 293 / 8e-98 EMBRYO DEFECTIVE 3114, Mitochondrial transcription termination factor family protein (.1.2) Lus10014567 [exp] 162 / 2e-47 AT2G34620 300 / 6e-101 Mitochondrial transcription termination factor family protein (.1) Lus10016971 [exp] 160 / 9e-47 AT2G36000 271 / 2e-89 EMBRYO DEFECTIVE 3114, Mitochondrial transcription termination factor family protein (.1.2) Lus10026325 [exp] 110 / 5e-28 AT3G18870 278 / 3e-93 Mitochondrial transcription termination factor family protein (.1) Lus10042342 [exp] 109 / 1e-27 AT3G18870 276 / 1e-92 Mitochondrial transcription termination factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G167400 [exp] 315 / 7e-108 AT2G03050 303 / 3e-103 SINGLET OXYGEN-LINKED DEATH ACTIVATOR 10, EMBRYO DEFECTIVE 93, Mitochondrial transcription termination factor family protein (.1) Potri.011G081400 [exp] 197 / 3e-61 AT2G34620 392 / 5e-138 Mitochondrial transcription termination factor family protein (.1) Potri.006G205000 [exp] 139 / 9e-39 AT2G36000 284 / 2e-94 EMBRYO DEFECTIVE 3114, Mitochondrial transcription termination factor family protein (.1.2) Potri.016G072200 [exp] 137 / 6e-38 AT2G36000 280 / 1e-92 EMBRYO DEFECTIVE 3114, Mitochondrial transcription termination factor family protein (.1.2) Potri.004G150600 [exp] 115 / 3e-30 AT3G18870 311 / 1e-106 Mitochondrial transcription termination factor family protein (.1) Potri.017G067600 [exp] 110 / 5e-27 AT4G14605 571 / 0.0 Mitochondrial transcription termination factor family protein (.1) Potri.008G088100 [exp] 101 / 6e-27 AT2G03050 117 / 7e-34 SINGLET OXYGEN-LINKED DEATH ACTIVATOR 10, EMBRYO DEFECTIVE 93, Mitochondrial transcription termination factor family protein (.1) Potri.007G001800 [exp] 109 / 2e-26 AT1G78930 633 / 0.0 Mitochondrial transcription termination factor family protein (.1) Potri.004G209400 [exp] 95 / 3e-22 AT4G38160 481 / 3e-172 pigment defective 191, Mitochondrial transcription termination factor family protein (.1.2.3) Potri.001G361800 [exp] 96 / 7e-22 AT5G55580 584 / 0.0 Mitochondrial transcription termination factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02536 [flax] [poplar] mTERF mTERF
Representative CDS sequence Show only first row Show all	>Lus10026612 pacid=23164359 polypeptide=Lus10026612 locus=Lus10026612.g ID=Lus10026612.BGIv1.0 annot-version=v1.0 ATGAAAATGCTTATCAATGGCGGACCAATACAGCTCTTCGCTTCTCTGCCGCCACTCAGTAACCAAATCCAAATCCGCGCAGCAAGTCTGGAAACCCTGA GCACCGCCACCATGCCGCCGCGGGACGCCGGAATCCTCTTCCGCAAGAAGCTAATCTACCTCGCAAACCTCAAAATCGACGTCCGAAAAGCCCTGACCGT TAACCCTAACATCCGCTCCACTCCAATCACCGCCTTCCACTCCGTCGAGCAGTGCCTCTCCTCCATGGGACTCCACCGTCGCGCAATTGGAAGAATCCTC GACATGTATCCAACCGTCCTCACATTCGATTCATACGCCGACTTATACCCGGTCTTCGATTTCCTCCTCCATGAGGTAGGCATCGAGTATCGCGAGATCC ACAAGTCAATTTCGCGGTGCCCTAGGATACTGACGTGTAGCCTGGAGTGTCAATTGAGGCCAGCGTTTGAGTTTCTGGTATCGGTGGGGTTTGTTGGGAA GCACCGTCTTACTCCTCAGACGACGTGTCTCTTGGTTTACAATGTGGAGAATACGCTGAAGAGGAAGATTGCGTGGTTGAAAGGGTTAGGGATTGAGGAT AGTGAGGTGGCAACTATGGTGATTAGGACTCCAGGGCTGTTTACATTTAGCGTAGAGAATAATCTGGTGCCGAAGTTCGAGTTTTTCGTGGAGGAAATGA AGGGGAATGTGGAGGAGTTGAAGAGCTTTCCTCAGTTGTTTTGTTATAGTTTGGAAGGCAGGATCAAGCCTAGGCATAGGATGTTGGCAGAGCTTGGGAT TCGGCTTCCTGTGTCGAAGATGTTGATTGTTAACGATTGGGAGTTCGATAGGCGGTTGAGTAAGATCAGGCTCGGTGAAGCTACGGAGGTGTTAGATGCA TGGACATAA
AA sequence Show only first row Show all	>Lus10026612 pacid=23164359 polypeptide=Lus10026612 locus=Lus10026612.g ID=Lus10026612.BGIv1.0 annot-version=v1.0 MKMLINGGPIQLFASLPPLSNQIQIRAASLETLSTATMPPRDAGILFRKKLIYLANLKIDVRKALTVNPNIRSTPITAFHSVEQCLSSMGLHRRAIGRIL DMYPTVLTFDSYADLYPVFDFLLHEVGIEYREIHKSISRCPRILTCSLECQLRPAFEFLVSVGFVGKHRLTPQTTCLLVYNVENTLKRKIAWLKGLGIED SEVATMVIRTPGLFTFSVENNLVPKFEFFVEEMKGNVEELKSFPQLFCYSLEGRIKPRHRMLAELGIRLPVSKMLIVNDWEFDRRLSKIRLGEATEVLDA WT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G03050		SOLDAT10, EMB93	SINGLET OXYGEN-LINKED DEATH AC...		Lus10026612 [exp]	0	1
AT2G30470	B3	HSI2, VAL1	VP1/ABI3-LIKE 1, high-level ex...		Lus10011245 [exp]	2.6	0.9158
AT2G47620		CHB1, ATSWI3A	SWITCH/sucrose nonfermenting 3...		Lus10043188 [exp]	6.0	0.8585
AT3G22520			unknown protein		Lus10041202 [exp]	7.3	0.9024
AT1G48620		HON5	high mobility group A5 (.1)		Lus10028911 [exp]	7.5	0.8872
AT1G75310		AUL1	auxilin-like 1, auxin-like 1 p...		Lus10010642 [exp]	8.6	0.9049
AT5G41580			RING/U-box superfamily protein...		Lus10032307 [exp]	9.5	0.8788
AT3G23780		NRPE2, DMS2, DR...	DEFECTIVE IN MERISTEM SILENCIN...		Lus10039677 [exp]	9.7	0.8952
AT1G52310			protein kinase family protein ...		Lus10040381 [exp]	10.1	0.8590
AT3G48670		RDM12, IDN2	RNA-DIRECTED DNA METHYLATION 1...		Lus10000951 [exp]	11.8	0.8397
AT3G52110			unknown protein		Lus10029522 [exp]	13.6	0.8854

Compare expression of checked genes

Lus10026612 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.