Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G03060 277 / 5e-90 MADS AGL30 AGAMOUS-like 30 (.1.2) AT1G18750 252 / 4e-80 MADS AGL65, AGL102 AGAMOUS-like 65 (.1.2) AT1G69540 240 / 4e-76 MADS AGL94 AGAMOUS-like 94 (.1) AT1G77980 108 / 1e-26 MADS AGL66 AGAMOUS-like 66 (.1) AT1G22130 99 / 4e-23 MADS AGL104 AGAMOUS-like 104 (.1) AT1G77950 93 / 2e-21 MADS AGL67 AGAMOUS-like 67 (.1.2) AT3G57390 76 / 1e-15 MADS AGL18 AGAMOUS-like 18 (.1.2) AT2G26320 72 / 3e-15 MADS AGL33 AGAMOUS-like 33 (.1) AT4G11880 74 / 5e-15 MADS AGL14 AGAMOUS-like 14 (.1) AT5G13790 73 / 3e-14 MADS AGL15 AGAMOUS-like 15 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030450 [exp] 660 / 0 AT2G03060 301 / 4e-100 AGAMOUS-like 30 (.1.2) Lus10036761 [exp] 478 / 6e-169 AT2G03060 284 / 5e-93 AGAMOUS-like 30 (.1.2) Lus10037166 [exp] 477 / 1e-168 AT2G03060 282 / 2e-92 AGAMOUS-like 30 (.1.2) Lus10019089 [exp] 289 / 2e-94 AT1G18750 279 / 3e-91 AGAMOUS-like 65 (.1.2) Lus10034464 [exp] 290 / 7e-92 AT1G18750 281 / 1e-88 AGAMOUS-like 65 (.1.2) Lus10022506 [exp] 114 / 4e-28 AT1G22130 277 / 1e-91 AGAMOUS-like 104 (.1) Lus10016810 [exp] 105 / 3e-25 AT1G22130 239 / 5e-77 AGAMOUS-like 104 (.1) Lus10024823 [exp] 91 / 2e-20 AT1G22130 142 / 3e-40 AGAMOUS-like 104 (.1) Lus10018714 [exp] 79 / 1e-16 AT1G22130 122 / 7e-33 AGAMOUS-like 104 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G088200 [exp] 480 / 2e-169 AT2G03060 297 / 4e-98 AGAMOUS-like 30 (.1.2) Potri.010G167300 [exp] 457 / 2e-160 AT2G03060 259 / 4e-83 AGAMOUS-like 30 (.1.2) Potri.002G092300 [exp] 106 / 2e-25 AT1G22130 313 / 1e-105 AGAMOUS-like 104 (.1) Potri.007G087500 [exp] 102 / 6e-24 AT1G22130 229 / 9e-73 AGAMOUS-like 104 (.1) Potri.001G112400 [exp] 77 / 5e-16 AT4G22950 253 / 6e-86 AGAMOUS-like 19 (.1) Potri.007G120002 [exp] 71 / 3e-15 AT1G77980 97 / 1e-25 AGAMOUS-like 66 (.1) Potri.012G133000 [exp] 74 / 7e-15 AT5G62165 218 / 3e-72 FOREVER YOUNG FLOWER, AGAMOUS-like 42 (.1.2.3.4.5) Potri.012G100200 [exp] 74 / 7e-15 AT1G26310 149 / 2e-44 CAULIFLOWER, AGAMOUS-like 10, K-box region and MADS-box transcription factor family protein (.1) Potri.009G055700 [exp] 74 / 1e-14 AT5G13790 241 / 9e-80 AGAMOUS-like 15 (.1) Potri.006G048700 [exp] 74 / 1e-14 AT3G57390 219 / 2e-71 AGAMOUS-like 18 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00319 [flax] [poplar] SRF-TF SRF-type transcription factor (DNA-binding and dimerisation domain)
Representative CDS sequence Show only first row Show all	>Lus10026613 pacid=23164386 polypeptide=Lus10026613 locus=Lus10026613.g ID=Lus10026613.BGIv1.0 annot-version=v1.0 ATGGGAAGGGTGAAGCTGAAGATCAAGAAACTGGAGAACACAAATGGCCGCCAGGCGACGTATGGGAAGAGGAAGCATGGAATCTTGAAGAAGGCTAATG AGTTGTCTATACTGTGCGACATTCCCATCATCCTTCTTATGTTCTCACCGACTGGGAAGCCTTCGTTGTGTAAAGGGAAACGAAGCATTGAAGAAGTGGT CACAAAGTTTGCTCAGTTAACACCTCAAGAAAGGACCAAGAGGAAGTTGGAAAGCCTCGAAGCATTGAAGAAAACGTTTAAGAAGTTGGACCACGATGTC AACATATCTGAATTTTTCGGGTCAAGCTCTCAAACGATAGAGGACCTTACGAACCAGGCAAATCTACTGGAGAACCAAATTTCTGAAACCCGTAAGAGAC TGAGTTATTGGACTAACGCGGATGAGATACACAGCGTTGATCATTTGGAGCAGTTGGAGAATTCTGTCAGGGAATCGCTTAGTCGAATCCAAGCACATAA GGAATATTTAGGAAAACAGCAAATTGTGTCGCTGGATTGCAATAGTCAGCCTTGTTTGCAGTTCCAAAACGAAATGCAGATGCCTTTCAGAATGAATCCT GAGCAGCAGCAGTTCCCACCTTTGCAACAATGGCTTCCTAACTGTGACAACCAACATTTCATGTTACCAGATGACCCGAATTTACTGCCCCAGAGGGATA TTGAATGCTCTGCAAGTTCCTCATACGGGAGTTATTCCGGATACTATCCCACAGGGAAAGCTTCCGATCTCTCTAATTCGAGACAAGAAAGCGCTGTGAG CGGTATTCTTAACGAATTGCACGGTAACACATCTTTAAGAATGCAGTTGCCAGGACAGCAGTACCCCCAATACATGCCATACAATCTGAATTTGCTTAAC GAAGTAAAGTTCCAGCCAGCACCAGAAATGAGCCTGCAAGAAATCCCTGCAGATTTTCATCTTAATGGCAGCTTCGAAGTCCCCAAACCGGGCTACTGTA CCACTCCCGGTAGCTGGGCGTCTACATCTGGACCTTGCTCCGTTACCATGTTCGACGATCAACTGTTTTCCCAGGTTCATCCTCCATTACCTGTTACAAA GCCTTCCACTTTTACCTGTTATATGAAACCACTGTTAACATTTAAGGCCATGAACCGGTATTACGATATGCTGCATTCTGGAATTGCTTTGTTTTACTAT TTCTCTAGCACTGTCTTACGCTAG
AA sequence Show only first row Show all	>Lus10026613 pacid=23164386 polypeptide=Lus10026613 locus=Lus10026613.g ID=Lus10026613.BGIv1.0 annot-version=v1.0 MGRVKLKIKKLENTNGRQATYGKRKHGILKKANELSILCDIPIILLMFSPTGKPSLCKGKRSIEEVVTKFAQLTPQERTKRKLESLEALKKTFKKLDHDV NISEFFGSSSQTIEDLTNQANLLENQISETRKRLSYWTNADEIHSVDHLEQLENSVRESLSRIQAHKEYLGKQQIVSLDCNSQPCLQFQNEMQMPFRMNP EQQQFPPLQQWLPNCDNQHFMLPDDPNLLPQRDIECSASSSYGSYSGYYPTGKASDLSNSRQESAVSGILNELHGNTSLRMQLPGQQYPQYMPYNLNLLN EVKFQPAPEMSLQEIPADFHLNGSFEVPKPGYCTTPGSWASTSGPCSVTMFDDQLFSQVHPPLPVTKPSTFTCYMKPLLTFKAMNRYYDMLHSGIALFYY FSSTVLR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G03060	MADS	AGL30	AGAMOUS-like 30 (.1.2)		Lus10026613 [exp]	0	1
AT4G31590		ATCSLC5, ATCSLC...	CELLULOSE-SYNTHASE LIKE C5, Ce...		Lus10026923 [exp]	1.4	0.9192
AT1G57600			MBOAT (membrane bound O-acyl t...		Lus10013485 [exp]	2.4	0.9011
AT5G22030		UBP8	ubiquitin-specific protease 8 ...		Lus10013369 [exp]	3.9	0.8811
AT2G26610			Transducin family protein / WD...		Lus10006655 [exp]	5.5	0.8323
AT2G39750			S-adenosyl-L-methionine-depend...		Lus10040268 [exp]	15.7	0.8600
AT1G79500		ATKDSA1, KDSA	Aldolase-type TIM barrel famil...		Lus10001765 [exp]	16.7	0.8748
AT4G39050			Kinesin motor family protein (...		Lus10041958 [exp]	18.0	0.8222
AT1G24764		ATMAP70-2	microtubule-associated protein...		Lus10013238 [exp]	18.9	0.8408
AT4G39050			Kinesin motor family protein (...		Lus10017969 [exp]	20.2	0.8471
AT4G24530			O-fucosyltransferase family pr...		Lus10009276 [exp]	20.9	0.8108

Compare expression of checked genes

Lus10026613 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.