Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69530 316 / 1e-109 ATHEXPALPHA1.2, AT-EXP1, ATEXP1, ATEXPA1, EXP1 EXPANSIN 1, expansin A1 (.1.2.3.4.5) AT2G03090 312 / 4e-108 ATHEXPALPHA1.3, ATEXP15, ATEXPA15 EXPANSIN 15, expansin A15 (.1) AT1G26770 310 / 2e-107 ATHEXPALPHA1.1, AT-EXP10, ATEXP10, ATEXPA10 ARABIDOPSIS THALIANA EXPANSIN ALPHA 1.1, ARABIDOPSIS THALIANA EXPANSIN 10, expansin A10 (.1.2) AT5G56320 293 / 2e-100 ATHEXPALPHA1.5, ATEXP14, ATEXPA14 EXPANSIN 14, expansin A14 (.1) AT2G40610 280 / 1e-95 ATHEXPALPHA1.11, ATEXP8, ATEXPA8 expansin A8 (.1) AT3G29030 271 / 8e-92 ATEXP5, ATHEXPALPHA1.4, ATEXPA5 ARABIDOPSIS THALIANA EXPANSIN A5, ARABIDOPSIS THALIANA EXPANSIN 5, expansin A5 (.1) AT5G02260 268 / 2e-90 ATHEXPALPHA1.10, ATEXP9, ATEXPA9 expansin A9 (.1) AT2G39700 266 / 1e-89 ATHEXPALPHA1.6, ATEXP4, ATEXPA4 expansin A4 (.1) AT3G55500 265 / 3e-89 ATHEXPALPHA1.7, ATEXP16, ATEXPA16 EXPANSIN 16, expansin A16 (.1) AT5G05290 263 / 1e-88 ATHEXPALPHA1.12, ATEXP2, ATEXPA2 EXPANSIN 2, expansin A2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036763 [exp] 333 / 4e-116 AT1G69530 426 / 3e-153 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Lus10037164 [exp] 332 / 1e-115 AT1G69530 420 / 2e-150 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Lus10034227 [exp] 290 / 5e-99 AT2G40610 416 / 7e-149 expansin A8 (.1) Lus10008603 [exp] 290 / 5e-99 AT2G40610 397 / 2e-141 expansin A8 (.1) Lus10009917 [exp] 286 / 2e-97 AT2G40610 395 / 9e-141 expansin A8 (.1) Lus10042214 [exp] 285 / 3e-97 AT2G40610 393 / 7e-140 expansin A8 (.1) Lus10033011 [exp] 285 / 4e-97 AT3G29030 389 / 2e-138 ARABIDOPSIS THALIANA EXPANSIN A5, ARABIDOPSIS THALIANA EXPANSIN 5, expansin A5 (.1) Lus10030449 [exp] 271 / 3e-92 AT1G69530 364 / 4e-129 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Lus10029038 [exp] 269 / 4e-91 AT2G40610 418 / 6e-150 expansin A8 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G167200 [exp] 327 / 8e-114 AT1G69530 335 / 1e-116 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Potri.008G088300 [exp] 325 / 2e-113 AT1G69530 335 / 3e-117 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Potri.004G123200 [exp] 308 / 3e-106 AT1G69530 334 / 1e-116 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Potri.001G001100 [exp] 306 / 7e-106 AT2G03090 375 / 5e-133 EXPANSIN 15, expansin A15 (.1) Potri.013G060800 [exp] 301 / 1e-103 AT2G03090 356 / 1e-125 EXPANSIN 15, expansin A15 (.1) Potri.013G154700 [exp] 300 / 2e-103 AT2G40610 348 / 2e-122 expansin A8 (.1) Potri.019G057500 [exp] 300 / 4e-103 AT2G40610 374 / 2e-132 expansin A8 (.1) Potri.017G085300 [exp] 298 / 2e-102 AT1G26770 355 / 5e-125 ARABIDOPSIS THALIANA EXPANSIN ALPHA 1.1, ARABIDOPSIS THALIANA EXPANSIN 10, expansin A10 (.1.2) Potri.016G135200 [exp] 281 / 1e-95 AT2G40610 400 / 6e-143 expansin A8 (.1) Potri.006G108000 [exp] 278 / 1e-94 AT2G40610 379 / 2e-134 expansin A8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [flax] [poplar] E-set PF01357 [flax] [poplar] Expansin_C Expansin C-terminal domain CL0199 [flax] [poplar] DPBB PF03330 [flax] [poplar] DPBB_1 Lytic transglycolase
Representative CDS sequence Show only first row Show all	>Lus10026614 pacid=23164278 polypeptide=Lus10026614 locus=Lus10026614.g ID=Lus10026614.BGIv1.0 annot-version=v1.0 ATGGGTCTTAGGCTTTTCCTCCTCTCTGTTTCAGCTCTGGCAATGGCGGCCACTGCCGCCGGCTACGGCGGCGGAGAAGGCGGAGGATGGGTCAACGCTC ACGCCACTTTCTACGGCGGCGGCGATGCTTCTGGCACAATGGGCGGAGCTTGTGGGTATGGGAATCCGTACAGCCAGGGATACGGGACGAACACTGCAGC TTTGAGCACGGCGCTGTTCAACAATGGACTTGCTTGTGGCTCTTGCTACGAGATTAAGTGTGTCAACGACGGGAAATGGTGCTTGCCCGGCTCGATTCTC ATCACGGCGACAAACTTCTGCCCGCCGAATAATGCTCTGCCCAACAACGCCGGCGGGTGGTGCAACCCTCCTCAGCATCACTTTGACCTCTCTCAGCCTG TATTCCAGCACATTGCTCAGTACAAGGCCGGAATCGTCCCTGTCGCCTACCGCCGGGTTGCATGCAGGAGAAGAGGAGGCATCAGGTTCACAATCAATGG CCACTCATACTTCAATCTGGTCTTGATCACCAACGTTGGTGGAGCTGGTGATGTCCACTCCGTGTCGATTAAGGGGTCGAAAACCGGATGGCAAGCCATG TCTAGGAACTGGGGGCAGAATTGGCAGAGCAACAACTACCTCAATGGCCAAGCCTTGTCCTTCAAGGTCACAACCAGCGATGGCCGCACCGTCATCTCCA ACAATGTCACCCCTTCCGGGTGGTCCTTTGGCCAGACCTTCGCTGGCGCACAATTCCGTTGA
AA sequence Show only first row Show all	>Lus10026614 pacid=23164278 polypeptide=Lus10026614 locus=Lus10026614.g ID=Lus10026614.BGIv1.0 annot-version=v1.0 MGLRLFLLSVSALAMAATAAGYGGGEGGGWVNAHATFYGGGDASGTMGGACGYGNPYSQGYGTNTAALSTALFNNGLACGSCYEIKCVNDGKWCLPGSIL ITATNFCPPNNALPNNAGGWCNPPQHHFDLSQPVFQHIAQYKAGIVPVAYRRVACRRRGGIRFTINGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAM SRNWGQNWQSNNYLNGQALSFKVTTSDGRTVISNNVTPSGWSFGQTFAGAQFR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G69530		ATHEXPALPHA1.2,...	EXPANSIN 1, expansin A1 (.1.2....		Lus10026614 [exp]	0	1
AT3G18550	TCP	AtBRC1, ATTCP18...	BRANCHED 1, TCP family transcr...		Lus10021713 [exp]	1.4	0.8342
AT5G54510		DFL1, GH3.6	DWARF IN LIGHT 1, Auxin-respon...		Lus10014804 [exp]	4.4	0.7368
AT1G68930			pentatricopeptide (PPR) repeat...		Lus10030908 [exp]	4.6	0.8150
AT1G66730		AtLIG6	DNA LIGASE 6 (.1)		Lus10033580 [exp]	7.7	0.7711
AT1G12630	AP2_ERF		Integrase-type DNA-binding sup...		Lus10027413 [exp]	8.4	0.8210
AT2G29120		ATGLR2.7	GLUTAMATE RECEPTOR 2.7, gluta...		Lus10026876 [exp]	12.7	0.7700
AT1G13190			RNA-binding (RRM/RBD/RNP motif...		Lus10038759 [exp]	13.4	0.7879
AT1G58100	TCP	TCP8	TCP domain protein 8, TCP fami...		Lus10008444 [exp]	14.0	0.7520
AT3G63380			ATPase E1-E2 type family prote...		Lus10004087 [exp]	17.7	0.7572
AT3G49350			Ypt/Rab-GAP domain of gyp1p su...		Lus10008839 [exp]	18.3	0.7662

Compare expression of checked genes

Lus10026614 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.