Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69510 103 / 9e-29 cAMP-regulated phosphoprotein 19-related protein (.1.2.3) AT5G64130 100 / 1e-27 cAMP-regulated phosphoprotein 19-related protein (.1.2.3) AT4G16146 76 / 2e-18 cAMP-regulated phosphoprotein 19-related protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030448 [exp] 239 / 4e-82 AT1G69510 123 / 1e-36 cAMP-regulated phosphoprotein 19-related protein (.1.2.3) Lus10036768 [exp] 108 / 1e-30 AT5G64130 116 / 6e-35 cAMP-regulated phosphoprotein 19-related protein (.1.2.3) Lus10009146 [exp] 95 / 1e-25 AT5G64130 150 / 2e-48 cAMP-regulated phosphoprotein 19-related protein (.1.2.3) Lus10037162 [exp] 100 / 1e-24 AT1G69523 268 / 4e-84 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10028499 [exp] 87 / 1e-22 AT5G64130 143 / 2e-45 cAMP-regulated phosphoprotein 19-related protein (.1.2.3) Lus10016857 [exp] 71 / 3e-15 AT5G49350 138 / 3e-40 Glycine-rich protein family (.1.2) Lus10037727 [exp] 72 / 4e-15 AT5G49350 136 / 1e-38 Glycine-rich protein family (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G167000 [exp] 105 / 3e-29 AT1G69510 104 / 4e-29 cAMP-regulated phosphoprotein 19-related protein (.1.2.3) Potri.017G102700 [exp] 101 / 3e-28 AT5G64130 159 / 1e-51 cAMP-regulated phosphoprotein 19-related protein (.1.2.3) Potri.004G111900 [exp] 100 / 1e-27 AT5G64130 152 / 4e-49 cAMP-regulated phosphoprotein 19-related protein (.1.2.3) Potri.010G141300 [exp] 81 / 2e-20 AT4G16146 105 / 3e-31 cAMP-regulated phosphoprotein 19-related protein (.1) Potri.008G108201 [exp] 78 / 4e-19 AT4G16146 103 / 4e-30 cAMP-regulated phosphoprotein 19-related protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04667 [flax] [poplar] Endosulfine cAMP-regulated phosphoprotein/endosulfine conserved region
Representative CDS sequence Show only first row Show all	>Lus10026615 pacid=23164424 polypeptide=Lus10026615 locus=Lus10026615.g ID=Lus10026615.BGIv1.0 annot-version=v1.0 ATGTCGAGTGGCGCCGGCGATGCAGAGATGGCGGCAAACGACGACAAACCCCACGAGCAGCAACTCGATCAAGAATCGGAGAAGAAAGGATCGGCCGACG GCGGAGATCCCAAGGACGGAAATGGAGAGAACCCATCTCCTTCTCCGGAGCAAGAGGAGCAGATAATTAGAAGCAAATATGGCGGGATTTTGCCCAAGAA GAAGCCGTTGATTTCCAAGGATCATGAGCGTGCTTTCTTTGACTCTGCTGATTGGGCACTTGGAAAGCAAGGAGCAAAGCCTAAAGGTCCCCTTGAAGCT CTACGCCCAAAGTTGCAGCCAACTCGACAACAGCAATCTCGATCAAGACGATCAGCTTATGCTCACAGCAACGAAGACGAAGATTCTCAGTCATTTGTGC TTTTGAATTGGGCAGTAGATGGCACAAATCCGACATCTGCAGCAGACGACGAAACAGGAAGCCAATCAGTTGGAGGAGAAACAGCTGAGGAACAGAACCA TGTTCAATAG
AA sequence Show only first row Show all	>Lus10026615 pacid=23164424 polypeptide=Lus10026615 locus=Lus10026615.g ID=Lus10026615.BGIv1.0 annot-version=v1.0 MSSGAGDAEMAANDDKPHEQQLDQESEKKGSADGGDPKDGNGENPSPSPEQEEQIIRSKYGGILPKKKPLISKDHERAFFDSADWALGKQGAKPKGPLEA LRPKLQPTRQQQSRSRRSAYAHSNEDEDSQSFVLLNWAVDGTNPTSAADDETGSQSVGGETAEEQNHVQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G69510			cAMP-regulated phosphoprotein ...		Lus10026615 [exp]	0	1
AT1G69510			cAMP-regulated phosphoprotein ...		Lus10030448 [exp]	2.4	0.8334
AT1G43130		LCV2	like COV 2 (.1)		Lus10018868 [exp]	3.2	0.8450
AT2G36320			A20/AN1-like zinc finger famil...		Lus10035603 [exp]	5.7	0.8094
AT3G29090		PME31, ATPME31	A. THALIANA PECTIN METHYLESTER...		Lus10026047 [exp]	13.0	0.7514
AT1G64230		UBC28	ubiquitin-conjugating enzyme 2...		Lus10021385 [exp]	13.9	0.8161
AT3G26100			Regulator of chromosome conden...		Lus10011399 [exp]	14.1	0.7545
AT2G41430		LSR1, CID1, ERD...	CTC-Interacting Domain 1, dehy...		Lus10035419 [exp]	15.5	0.7833
AT5G59300		ATUBC7, UBC7	ARABIDOPSIS THALIANA UBIQUITIN...		Lus10040844 [exp]	17.5	0.7504
AT3G09830			Protein kinase superfamily pro...		Lus10013812 [exp]	17.5	0.7748
AT5G21090			Leucine-rich repeat (LRR) fami...		Lus10026751 [exp]	19.4	0.7805

Compare expression of checked genes

Lus10026615 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.