Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G47790 76 / 2e-15 F-box and associated interaction domains-containing protein (.1) AT1G32420 69 / 3e-13 F-box and associated interaction domains-containing protein (.1) AT4G38870 62 / 8e-11 F-box and associated interaction domains-containing protein (.1) AT4G09190 62 / 1e-10 F-box and associated interaction domains-containing protein (.1) AT1G47765 59 / 6e-10 F-box and associated interaction domains-containing protein (.1) AT4G21240 59 / 1e-09 F-box and associated interaction domains-containing protein (.1) AT1G47730 58 / 2e-09 F-box and associated interaction domains-containing protein (.1) AT1G50870 57 / 5e-09 F-box and associated interaction domains-containing protein (.1) AT3G10240 55 / 2e-08 F-box and associated interaction domains-containing protein (.1) AT3G61340 54 / 4e-08 F-box and associated interaction domains-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007285 [exp] 256 / 5e-83 AT3G04660 82 / 7e-17 F-box and associated interaction domains-containing protein (.1) Lus10007277 [exp] 256 / 6e-83 AT3G04660 82 / 6e-17 F-box and associated interaction domains-containing protein (.1) Lus10011210 [exp] 250 / 5e-80 AT1G32420 87 / 7e-19 F-box and associated interaction domains-containing protein (.1) Lus10013934 [exp] 214 / 1e-66 AT1G11270 72 / 7e-14 F-box and associated interaction domains-containing protein (.1.2.3) Lus10011190 [exp] 216 / 3e-66 AT1G32420 78 / 1e-15 F-box and associated interaction domains-containing protein (.1) Lus10016866 [exp] 206 / 7e-62 AT1G32420 84 / 2e-17 F-box and associated interaction domains-containing protein (.1) Lus10011200 [exp] 189 / 2e-58 AT1G47790 84 / 2e-18 F-box and associated interaction domains-containing protein (.1) Lus10007606 [exp] 183 / 2e-56 AT1G47790 67 / 3e-12 F-box and associated interaction domains-containing protein (.1) Lus10011197 [exp] 187 / 1e-55 AT1G47790 86 / 6e-18 F-box and associated interaction domains-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G458400 [exp] 78 / 5e-16 AT2G31470 113 / 8e-28 DROUGHT TOLERANCE REPRESSOR, F-box and associated interaction domains-containing protein (.1) Potri.001G318400 [exp] 71 / 1e-13 AT3G06240 142 / 3e-38 F-box family protein (.1) Potri.007G074084 [exp] 64 / 2e-11 AT1G11270 83 / 1e-17 F-box and associated interaction domains-containing protein (.1.2.3) Potri.019G062900 [exp] 61 / 2e-10 AT1G50870 69 / 1e-12 F-box and associated interaction domains-containing protein (.1) Potri.001G035500 [exp] 61 / 2e-10 AT4G12560 271 / 3e-87 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.001G318300 [exp] 57 / 3e-09 AT3G06240 140 / 7e-38 F-box family protein (.1) Potri.011G037312 [exp] 57 / 3e-09 AT3G07870 134 / 3e-35 F-box and associated interaction domains-containing protein (.1) Potri.017G058000 [exp] 57 / 4e-09 AT3G06240 138 / 5e-37 F-box family protein (.1) Potri.011G037200 [exp] 55 / 2e-08 AT3G07870 134 / 6e-35 F-box and associated interaction domains-containing protein (.1) Potri.012G099733 [exp] 53 / 8e-08 AT3G16210 92 / 2e-20 F-box family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0162 [flax] [poplar] FBA PF08268 [flax] [poplar] FBA_3 F-box associated domain CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10026616 pacid=23164247 polypeptide=Lus10026616 locus=Lus10026616.g ID=Lus10026616.BGIv1.0 annot-version=v1.0 ATGGGTGGAAGAAGACGCCGGGAAAGTGAAGTTGGGTATGAGGAGAGGAGGAAGAAGAGGAAGCTGGAGGAGACGACGACCACAAATAACAAGGATTTTA GTCTGATTTGGGCAACAAATAAGAATGATTTTCATGCCGATATGGTAGCTACGCAGATACTTAGTAGACTCCCAGCCAAGTCACTTATGCGGTTCAAGTC AGCCTGTAGAGGCTGGCGATCGATGATCGAAAAAGATTCGCACTTTATCAATTTACACCGCATACGTTCACAAGCACGCCGCCCGCCCGATCTGGACTGT GGTGATGATGGTGACCAGCTCAGAGGAGTAGCCACTGTTGAGAGCGTAACGAGAGTGGGAATCCCATGTCCTGCACATGTTGGAATTAGGGGACCTGTTA GGGGATTGGTCTGTTTCTTTGACGTTCGCAACTTGGTTTTAACAGAACCGCCGGTATGTGAATTCGGATTCGACCCCGATTCGGGAGAGCATAAAGTTAT TTTCGTGTGGCATGATTCTCCTGAAGCAGCAGCTTGTTGTGAGGTGTTGACTGTAGGGGTTGACTCTAGTTGGAGAATAACTGATGATGTACCTCCTAGA TATGACTTCTCCGGGTATATGAGTGCTTATGCCAATGGTTCCATCTATTATATGTTCCACAACAAGGCTGGGGCTGGCATTGAAGTAGTTGATGATATGA ATAATTACGATACTCTAGTGGCATTTGACATTGGATCTGAGAAGTTCAGGATGATAAAGATTCCCATATTCCGCTCCCCCAATTTGATGGAACTGGATGG GTGTCTAACCATGGTGCTTAAGTGCATCAAAACAGCGCGAACGCAGAAGCTATGA
AA sequence Show only first row Show all	>Lus10026616 pacid=23164247 polypeptide=Lus10026616 locus=Lus10026616.g ID=Lus10026616.BGIv1.0 annot-version=v1.0 MGGRRRRESEVGYEERRKKRKLEETTTTNNKDFSLIWATNKNDFHADMVATQILSRLPAKSLMRFKSACRGWRSMIEKDSHFINLHRIRSQARRPPDLDC GDDGDQLRGVATVESVTRVGIPCPAHVGIRGPVRGLVCFFDVRNLVLTEPPVCEFGFDPDSGEHKVIFVWHDSPEAAACCEVLTVGVDSSWRITDDVPPR YDFSGYMSAYANGSIYYMFHNKAGAGIEVVDDMNNYDTLVAFDIGSEKFRMIKIPIFRSPNLMELDGCLTMVLKCIKTARTQKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G47790			F-box and associated interacti...		Lus10026616 [exp]	0	1
AT1G67340			HCP-like superfamily protein w...		Lus10011362 [exp]	5.1	0.6867
AT3G09770		LOG2	LOSS OF GDU 2, RING/U-box supe...		Lus10041300 [exp]	11.0	0.6553
AT5G45100		BRG1	BOI-related gene 1, SBP (S-rib...		Lus10040613 [exp]	11.0	0.6426
AT1G26355		SP1L1	SPIRAL1-like1 (.1)		Lus10037069 [exp]	13.6	0.6528
AT5G53400		BOB1, BOBBER1	BOBBER1, HSP20-like chaperones...		Lus10040656 [exp]	26.1	0.6371
AT5G23850			Arabidopsis thaliana protein o...		Lus10037863 [exp]	34.3	0.6209
AT1G44350		ILL6	IAA-leucine resistant (ILR)-li...		Lus10018169 [exp]	35.2	0.6398
AT4G08455			BTB/POZ domain-containing prot...		Lus10042763 [exp]	51.3	0.6171
AT4G05460			RNI-like superfamily protein (...		Lus10026115 [exp]	93.1	0.5181
AT5G25280			serine-rich protein-related (....		Lus10008808 [exp]	133.0	0.5412

Compare expression of checked genes

Lus10026616 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.