Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G03150 321 / 1e-90 EMB1579 embryo defective 1579, ATP/GTP-binding protein family (.1) AT3G22930 46 / 3e-05 CML11 calmodulin-like 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030445 [exp] 1117 / 0 AT2G03150 373 / 5e-108 embryo defective 1579, ATP/GTP-binding protein family (.1) Lus10022589 [exp] 42 / 0.0009 AT3G43810 255 / 2e-88 calmodulin 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G166100 [exp] 399 / 5e-117 AT2G03150 368 / 4e-106 embryo defective 1579, ATP/GTP-binding protein family (.1) Potri.008G089100 [exp] 45 / 3e-05 AT2G04660 0 / 1 anaphase-promoting complex/cyclosome 2 (.1) Potri.008G159300 [exp] 43 / 0.0002 AT3G22930 235 / 1e-80 calmodulin-like 11 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10026618 pacid=23164422 polypeptide=Lus10026618 locus=Lus10026618.g ID=Lus10026618.BGIv1.0 annot-version=v1.0 ATGTATTCGAGAGGTAATGGGTATGGGCAGCAATCGTATGGTGGGCAGTCTAGCTACGCTCAAAGTTTAGCAAATGCGTATTCTGCTAGCTCTGTCGGAG GAACGGATTCGAGTTCTCAACATTCGCTGGCTTCTAGGCATCCTTCATTGTTGAGTAGTTCTCAGGAAGCGGATCTTGCTACTGGGTATAGAAGCCACAA CTCGGTTTCGGGGCACTATGGTGGGCAGTATGCATCTCTATATGGTTCAGCTGGTGGAGTGAGTGGTACTCAACAGGTGCCCTCAGCGAGTACCAAGGGA AGTGGGCTATCGGGTTTGGAAGGTCGTAGAGGCTATTCTTCAGTTGTGTCTGATTCACCTAAATTTGGATCAGGCGACTATGTTCCTTCTTCAACCCATA CATATGGACACAAAAGTGATCCATTGTACTCAGACAAGATCGCTGATTACACTGGAATAGACCGCAGGCATTATGGTGAGCAGAGTTCATATATCGGCAG GGACTTGCAAACTGATCCTGCTTCACGGTATACAGATTCTGTTGGCTTGAGTCATCAACGTCAGCAGACTGACAGATATGAGCGTCTGGATCAGTCCTCG ATTCTGCGGCAAGAGCAGTTGTTGAAATCACAATCAATTCACTCTACATCACTTGATGGAGGTTCCAGACCGCTTGATTATCTAGCAGCAAGAGGGGGTG CCAGTCGTCATCTCAACCAGGATCTCGCGTCTTATGGCAGACGAGTGGATGCTGAGCCTCGTGGCTCCTCAATTCTTAATGCTTCTTCTTACAACACGAC ACCTGCTTCATCAATATTAGGGGCAGCTCCACGAAGGAACGTTGATGATCTTCTATATTCCCAAAGTTTGACGAATCCAGGCTATGGTGTTAGCCTTCCT CCCGGTAGAGATTATGGTTCAGGAAAAGCTGCGTTGCAGCAGGGAACATCACTCGATGCGGAATATCGTGCTCTTCATCCGAGGATTGAAGAAAATCGCA GGGATGAAAGAGCCGGCTATCTTCGGGAGTTTGAGCTGCGAGAGGATGAACGTCGTAGAGAGTTCTTGCGTGAGAGGGAAAAAGAACGGGAGAAGGAACG AGAAAGGGAGAAGGAAAGAGACCGGGATCGTGAAAGGGAACGAGAACGGAGGCGCAACCGGGAGCGCATGCGTCATTCACCTGTTAAAGATAAACGGAGG GAATATGTCTGCAAGGTACATGGTTCCTGTTTGGTTGACTTAGAGAGGGACTATTTGTCGTTGGATAAGAGATACCCCAGACTCTTTGTGTCACCGGAGC TTTCTAAGGTTGTTGTTAATTGGCCAAAGGAGAATTTCAAGCTTTCGATACATACCCCTGTGAGTTTTGAGCATGATTTTGTGGAAGAGGAAAATGCTTT GGAGTCTAAGGACCTCTCCAGCAACCTCTTGGGGCATCATGATCTTAGTCAGTCAGCGAGTGGACGCACAGTATGGAACGCTAAGATAATTTTGATGAGT GGAGTGAGCAAAAGTGCTTTTGAGGTGCTGTCATCTGCGAAGATCGCTGATGATCGCCCACCTCATATTTGTAACATACTTAGATTTGCGGTGCTTAAGA AGGATCGTGCTTTTATGACAATCGGTGGGCCTTGGGATCCTATTGATGGCGGTGATCCATCCGTTGATGATTCTCCTTTGATTCAAACAGCACTAAGATA TGCAAAGGATGTTACCCAACTTGATCTCGGGAACTGTCGTCAGTGGAATCGGTTTCTTGAGGTACATTACAACCGATTTGGAAAGGACGGGTTGTTTAGT CATAAGGAGGTCACCGTTCTGTTTGTTCCTGATTTGTCTGAATGTCTTCCTTCACTTGAATCGTGGAGAGACCAGTGGCTTGCACATAATAAGACTGTTT CCGACAGAGAGCGCGAGCTTTCTCTGAAAAAAGAGAGATCTGCTGAAAAGAAGGAAGGTTCTAAAGGATCAGACCCTTCAAAAGATCCGACACAAGGAAT CAAACAAGAAAAGACCAAAGCATCTGTCTCTTCTGGTTCCAACAAAAAGGAGATTGCTTCCAAGGACAAGACTGTATCCCCGAAGGATGTCGAAAGTAAA ATGGATGAGGGGAACTTATCCAAGGATGTCTCGAAAGATGAGCAGGCTGAACCGTCCAGTACTCCGACATCTGCCGGTGCAAAAACAGGGAAAAAGAAGA TTGTTAAGAGAATTGTCAAGAGAAAGGCGGTTGCCAAGCCAGGTGGCGGTGTTGCTGCTGCCAGTGCAGCAACGAACAATTCGTCGAGTGCAGAGAAACC TGCTGAAAGTGAAGATAAGGACTTAGTAGAATCTGAAGGGAAAGGTGAGGTGACACCTCAACTAGTAGAAAAGAAACCAAAGGATAAATCAGAACCCAAC CCCGGAGGGACTGGGTCAGCTGCTGGTGTTAAAACAGCTGTTAAGAAAAAGATTATCAAGCGGGTGCTGAAGAGAAAGCTCACGCCGAACAAGGAAGCTA TTGATGGAACTACTGGCACAGTTAAGGAAGAGAAGAAGGTAGCTTCGGAAGCCAAGGAAACTGAAAATGCCGGGAATCAAGTTGAAGGCACCAGCGAGAA TGCTAACAAAGTAACTCCTACGATGTCTTTGAAATCTCCAGACAAGCAAGCGAGTGTGCCAAAGGCGAGTAAACCAGAAAGCAGCAAGGCCATCAAGGAA GATAAGGACGAAAAGAAGCCTGAAGGGAAGAATGGTACTGGAACCGATTTGGAGGTTAAGGGTGAGAAGCCAAAGGGTGCTGAGAAGGATAATAATAATA CTGGCAAGAAAGCGGTATCAGTGGATGAGCAGAGAGCAAAGGTTGAGAAAAAGGATAAGAATGGGAAAGATCAACAACCAAGGAGTAGATCTCCTAAGGA AATGAAAGAGAATAAAAAATCTGAAGAGCCACCGAGACACCCTGGATTGATTTTGCAGACGAAATGCGACAAGAGAACTATGCTGTACTCATTATCTCTT TCTCTGGACTCGCTTTTGGATTACACGGAACAGGACACCGACGAATCGACAATTGAGCTTTCTTTATTTGCGGAATCCATGCATGAAATGTTTCAGTATC AGATGGGTAGTCGTCTGCTAGATTTCCTTCAGAAACTTCGCGTTAAATTTGTTGCAAAGAGGAATCAAAGGAAACGGCAGCTTGATGTGGAAACGGAAGC AAAGGACAAAGATGACAAATCTTCGTCGAAGCGCCAAAAAACCAGCGAGGTTCCTGTGAAGAAAGAATCCGGAACTGAAACGTTGGATGCAACAAACCAA CCAGACGAACCGAAAACTACAAAGGAGGATACTTTAGTTCAAAATGAGGTGAAGGCTCAAAATGATGTAGAAGATGATGAAGAAGATCCAGATGCGGATC CGGATGAGGATCCAGATGCGGACCCGGATGAGGATCCAGATGAGGACCCAGATGTGGATCCAGATGAAGATCCGGACGAAGATCCTGAACCAGATGCAGA AATGGAGGATGCTGAGCAAAATGTAGCCAGCGACCAGAAAGACGGAAAGGAAGCAGCAAAAGCTATTAGTGCCGACTGTGGAAAAACAGTTGTTGCGCCT GTAAATGAAGCTGGTAAAGATAGTGAAATGAAAGATGCGGAGCCAAAAGTCAAGCAAGAACCAGATTCCTCCGGGAAAGACAACTTGGAAGCCGAGAAGA AGAAGAAAGAGTCTTCTTCTGCTGTTAAGGAGCCAGTGGTTAATAAGGAGCTTCTGCAGGCGTTCAGGTTTTTCGATCGGAATCTAGCTGGGTTCATCAG GGTTGAGGATATGAGGTTAATCATCCACACCCTGGGGAAGTTCCTCTCTCACAGAGACGTAAAGGATCTTGTTCAGAGTGCATTACTAGAGAGCAACACC GGGAGGGACGACCGGATCCTCTATAACAAGCTTGTGAGGATGAATCTATAG
AA sequence Show only first row Show all	>Lus10026618 pacid=23164422 polypeptide=Lus10026618 locus=Lus10026618.g ID=Lus10026618.BGIv1.0 annot-version=v1.0 MYSRGNGYGQQSYGGQSSYAQSLANAYSASSVGGTDSSSQHSLASRHPSLLSSSQEADLATGYRSHNSVSGHYGGQYASLYGSAGGVSGTQQVPSASTKG SGLSGLEGRRGYSSVVSDSPKFGSGDYVPSSTHTYGHKSDPLYSDKIADYTGIDRRHYGEQSSYIGRDLQTDPASRYTDSVGLSHQRQQTDRYERLDQSS ILRQEQLLKSQSIHSTSLDGGSRPLDYLAARGGASRHLNQDLASYGRRVDAEPRGSSILNASSYNTTPASSILGAAPRRNVDDLLYSQSLTNPGYGVSLP PGRDYGSGKAALQQGTSLDAEYRALHPRIEENRRDERAGYLREFELREDERRREFLREREKEREKEREREKERDRDRERERERRRNRERMRHSPVKDKRR EYVCKVHGSCLVDLERDYLSLDKRYPRLFVSPELSKVVVNWPKENFKLSIHTPVSFEHDFVEEENALESKDLSSNLLGHHDLSQSASGRTVWNAKIILMS GVSKSAFEVLSSAKIADDRPPHICNILRFAVLKKDRAFMTIGGPWDPIDGGDPSVDDSPLIQTALRYAKDVTQLDLGNCRQWNRFLEVHYNRFGKDGLFS HKEVTVLFVPDLSECLPSLESWRDQWLAHNKTVSDRERELSLKKERSAEKKEGSKGSDPSKDPTQGIKQEKTKASVSSGSNKKEIASKDKTVSPKDVESK MDEGNLSKDVSKDEQAEPSSTPTSAGAKTGKKKIVKRIVKRKAVAKPGGGVAAASAATNNSSSAEKPAESEDKDLVESEGKGEVTPQLVEKKPKDKSEPN PGGTGSAAGVKTAVKKKIIKRVLKRKLTPNKEAIDGTTGTVKEEKKVASEAKETENAGNQVEGTSENANKVTPTMSLKSPDKQASVPKASKPESSKAIKE DKDEKKPEGKNGTGTDLEVKGEKPKGAEKDNNNTGKKAVSVDEQRAKVEKKDKNGKDQQPRSRSPKEMKENKKSEEPPRHPGLILQTKCDKRTMLYSLSL SLDSLLDYTEQDTDESTIELSLFAESMHEMFQYQMGSRLLDFLQKLRVKFVAKRNQRKRQLDVETEAKDKDDKSSSKRQKTSEVPVKKESGTETLDATNQ PDEPKTTKEDTLVQNEVKAQNDVEDDEEDPDADPDEDPDADPDEDPDEDPDVDPDEDPDEDPEPDAEMEDAEQNVASDQKDGKEAAKAISADCGKTVVAP VNEAGKDSEMKDAEPKVKQEPDSSGKDNLEAEKKKKESSSAVKEPVVNKELLQAFRFFDRNLAGFIRVEDMRLIIHTLGKFLSHRDVKDLVQSALLESNT GRDDRILYNKLVRMNL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G03150		EMB1579	embryo defective 1579, ATP/GTP...		Lus10026618 [exp]	0	1
AT2G20990		SYT1, NTMC2TYPE...	SYNAPTOTAGMIN 1, ARABIDOPSIS T...		Lus10019782 [exp]	1.7	0.6925
AT1G09810		ECT11	evolutionarily conserved C-ter...		Lus10037364 [exp]	5.5	0.6837
AT2G23470		RUS4	ROOT UV-B SENSITIVE 4, Protein...		Lus10022474 [exp]	17.9	0.6170
AT3G14610		CYP72A7	"cytochrome P450, family 72, s...		Lus10025006 [exp]	23.2	0.6895
AT4G02460		PMS1	POSTMEIOTIC SEGREGATION 1, DNA...		Lus10007866 [exp]	27.5	0.6149
					Lus10002304 [exp]	27.7	0.6757
AT1G20550			O-fucosyltransferase family pr...		Lus10023948 [exp]	29.6	0.6654
AT4G06536			SPla/RYanodine receptor (SPRY)...		Lus10010241 [exp]	33.7	0.6338
AT1G09450		AtHaspin	Haspin-related gene, Protein ...		Lus10031442 [exp]	41.1	0.5465
AT5G19010		ATMPK16	mitogen-activated protein kina...		Lus10021945 [exp]	41.6	0.6428

Compare expression of checked genes

Lus10026618 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.