Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G04660 1070 / 0 APC2 anaphase-promoting complex/cyclosome 2 (.1) AT1G02980 56 / 1e-07 ATCUL2, CUL2 cullin 2 (.1) AT4G02570 56 / 1e-07 AXR6, ATCUL1 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) AT1G43140 50 / 8e-06 Cullin family protein (.1) AT5G46210 47 / 4e-05 CUL4, ATCUL4 cullin4 (.1) AT1G69670 44 / 0.0006 CUL3B, ATCUL3B ARABIDOPSIS THALIANA CULLIN 3B, cullin 3B (.1) AT1G26830 43 / 0.0009 CUL3A, ATCUL3A, ATCUL3 cullin 3A, cullin 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030444 [exp] 1394 / 0 AT2G04660 1059 / 0.0 anaphase-promoting complex/cyclosome 2 (.1) Lus10032200 [exp] 60 / 1e-08 AT4G02570 1269 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) Lus10024562 [exp] 59 / 1e-08 AT4G02570 1271 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) Lus10028917 [exp] 59 / 1e-08 AT4G02570 1290 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) Lus10004334 [exp] 59 / 1e-08 AT4G02570 1279 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) Lus10023306 [exp] 44 / 0.0005 AT5G46210 1077 / 0.0 cullin4 (.1) Lus10037188 [exp] 44 / 0.0005 AT1G26830 1328 / 0.0 cullin 3A, cullin 3 (.1) Lus10038504 [exp] 43 / 0.001 AT5G46210 913 / 0.0 cullin4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G089600 [exp] 1174 / 0 AT2G04660 1178 / 0.0 anaphase-promoting complex/cyclosome 2 (.1) Potri.008G089100 [exp] 100 / 1e-24 AT2G04660 0 / 1 anaphase-promoting complex/cyclosome 2 (.1) Potri.008G217300 [exp] 58 / 3e-08 AT4G02570 1272 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) Potri.010G023800 [exp] 56 / 9e-08 AT4G02570 1265 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) Potri.001G117200 [exp] 53 / 8e-07 AT4G02570 1226 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) Potri.004G132900 [exp] 51 / 4e-06 AT5G46210 1211 / 0.0 cullin4 (.1) Potri.003G115500 [exp] 50 / 5e-06 AT4G02570 1209 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) Potri.011G084400 [exp] 49 / 2e-05 AT5G46210 1250 / 0.0 cullin4 (.1) Potri.008G148300 [exp] 44 / 0.0005 AT1G26830 1342 / 0.0 cullin 3A, cullin 3 (.1) Potri.010G093200 [exp] 44 / 0.0006 AT1G26830 1345 / 0.0 cullin 3A, cullin 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00888 [flax] [poplar] Cullin Cullin family CL0123 [flax] [poplar] HTH PF08672 [flax] [poplar] ANAPC2 Anaphase promoting complex (APC) subunit 2
Representative CDS sequence Show only first row Show all	>Lus10026619 pacid=23164291 polypeptide=Lus10026619 locus=Lus10026619.g ID=Lus10026619.BGIv1.0 annot-version=v1.0 ATGGAAGAATCATCGACAACTCAATCAGCATGCAATTTCTCTGTTCTCGACGCATTGAGCGGCGATTCCATTGAGGAAATCCTCGACAGCTACAATGGCT TCTGCTCAACCTCCGAGGCTCTTCTCAGCTCTACCTCCGGCGACGTCTCCGTCGGACGAGAGTTCGTTTCTCACGCTCGCGTGCTCTGTAAGCACGGCCT CGATTCCCTCGTGCATGACCTTTTCCTCAAGTCTTTGGAGGAAACGTTTGAGAGTCAAGGGGCATTGAGATTTTGGCGGCATTTCGATGTGTATAAGGAT GATTCGACGCAGAAGAACAGTAAAAATAGAATTCCAGTTGATGGAAGTGAAGTGCAGCAAGTTTTGTGTAAAGCTCTGGAGGAAATATCATGTGTTAAAC AGTATCAAGAGAAGTGCTTGATGATGTTAGTTGATGGTTTGGAACGAGATGGTGAAAGGCGATATCTTTGCTCCAAGTATCAATTGATGGTTTCTTCAGT TCTTATGGCCAGCCTTCCTCGGCATTTTCCTGAGATACTGCACTCGTATTTTAAGGGAAAGCTTGAGGAACTTAGTACGATTATGGAGGGAGAGACTGAT GGAGAGGAGGAGGATGAAATGGAATTGGACGAAAAGGGAAAACCGTCTTACAAAAATGGTGACATGGATGTTGATGGATTTTCTCCCATGGGTAAGTTCA CTGAGAATAACAAATTGGTGAAGAACATAGGGAAGGTCGTTCGTCATCTCAGAAGTCTTGGGTTTACATCTATGACTGAAGATGCTTATGCTTCTGCTAT CTTTCTGCTTCTGAAGGACAAAGTGGATGATCTCGCTGGTGATGATTACAGAGGTTCAGTTTTGAAGTCGATCAAGCAGTGGATACAGGCTGTCCCTCTC CAATTCTTGAGTGCACTTCTGGCTTATCTTGGCGATTCCGCTAGCCACATCAGTTCTTCGCCAAGCGTAAAATCGCCTCTGGCTTCTCAGTATTCCCCGC AGTATCCTGGAAGCAATATGCCTTCTGAGGGACTCATTCGATGGAAATTACGGCTGGAGTATTTTGCGTATGAGACATTACAAGACTTGAGAATAGCCAA ACTGTTTGAGATTATTGTTGACTATCCTGACAGTTCTCCTGCTATTGAGGACTTGAAACAATGCCTAGAATATACAGGACAACATTCTAAGCTGGTGGAG TCCTTTATTTCAGCACTTCGATATCGTTTACTCACTGCGGGTGCTTCAACCAATGATATATTGCACCAGTATGTCTCAACCATTAAGGCGTTACGAACAA TTGATCCTACTGGGATCTTTCTTGAAGCTGTTGGTGAACCAATAAGAGATTACTTAAGGGGTCGGAAGGACACTATAAAATGCATTGTAACGATGCTTAC TGATGGAAGTGGAGGGAATGCCGCTGCATCTGGGATCGCTGGGGATAGCCTACTTGAAGAATTGAACAGGGAAGAGGAAGGACAGGAGAATAATGGTGCT GATGATGACTTCAGTGCCGATGACAAGCAAGCTTGGATAAATGCTGCTAACTGGGAACCTGATCCTGCTGAGGCTGATCCATTAAAGGGAAGCAGGAACC AGAGGAAAGTTGATATTTTAGGGATGATAATTAGCATAATCGGTTCAAAAGACCAACTTGTCAATGAATACCGTGTGATGCTAGCTGAAAAGCTTCTCAG CAAATCTGAATATGATATTGCCTCAGAGATTCGGACTTTAGAACTCCTCAAGGCAAGTGATTTTTTTGATACAGTGATACATTTTGGGGAAAGTAGCATG CAGAAGTGTGAAATCATGCTCAATGATCTGATTGACTCAAAGAGGAATAACCAAAATATTAAAACCACCATAAAACCATCTGAAACAGGGATAGAGCAAC AGGAAATGGGGGCAACTATGGATAATCTTAGTGCTACAATCATCTCCTCTAATTTCTGGCCTCCAATCCAGGATGAGGACCTTACTTTACCTGCACCAGT TGATCAGCTCCTAACCGATTATGCAAACCGGTATCACGAACTTAAGACTCCTCGTAAACTGCTATGGAAGAAGAATCTCGGCACTGTCAAGCTGGAGTTG CAATTTGAAGACAGAGAAGTTCAGTTTAATGTAACTCCCATACATGCTGCAATTATCATGCAATTCCAAGATCAAACAAGTTGGACCTCTAACCAGCTTG CCAATACCCTTGGTGTACCAGTGGATGTTCTCAATCGACGAATAAATTTCTGGATCAGCAAGGCATATGCCTCTATACAGGGAATCATAGCTGAATCACT TGGCACAGAACCCAATGACAACGTCTTTACTCTGGTTGAAGGTAATGCTGATGCTGGTAAGAATGCTGGCGTTATTGGCACTTGTGAGGAGTTGTTACCT GTTGATGACGAAGGAGAGAGTTCCGTGGCGTCCGTTGAGGACCAATTACGCAAGGAGATGACTGTTTACGAGCAATATATAATGGGAATGCTCAAAAATT TCGGCAGCATGGCTCTGGACCGCATTCATCACACTCTCAAGATATTTTGTGTCGCGGATGCCCCCTACGATAAGTCACTGCAACAGCTGCAGAGCTTTTT ATCAGGCTTGGTCCTGGAAGAGAAGGTTGAACTAAGAGATGGAATGTACTTTTTGAAGAAGTAA
AA sequence Show only first row Show all	>Lus10026619 pacid=23164291 polypeptide=Lus10026619 locus=Lus10026619.g ID=Lus10026619.BGIv1.0 annot-version=v1.0 MEESSTTQSACNFSVLDALSGDSIEEILDSYNGFCSTSEALLSSTSGDVSVGREFVSHARVLCKHGLDSLVHDLFLKSLEETFESQGALRFWRHFDVYKD DSTQKNSKNRIPVDGSEVQQVLCKALEEISCVKQYQEKCLMMLVDGLERDGERRYLCSKYQLMVSSVLMASLPRHFPEILHSYFKGKLEELSTIMEGETD GEEEDEMELDEKGKPSYKNGDMDVDGFSPMGKFTENNKLVKNIGKVVRHLRSLGFTSMTEDAYASAIFLLLKDKVDDLAGDDYRGSVLKSIKQWIQAVPL QFLSALLAYLGDSASHISSSPSVKSPLASQYSPQYPGSNMPSEGLIRWKLRLEYFAYETLQDLRIAKLFEIIVDYPDSSPAIEDLKQCLEYTGQHSKLVE SFISALRYRLLTAGASTNDILHQYVSTIKALRTIDPTGIFLEAVGEPIRDYLRGRKDTIKCIVTMLTDGSGGNAAASGIAGDSLLEELNREEEGQENNGA DDDFSADDKQAWINAANWEPDPAEADPLKGSRNQRKVDILGMIISIIGSKDQLVNEYRVMLAEKLLSKSEYDIASEIRTLELLKASDFFDTVIHFGESSM QKCEIMLNDLIDSKRNNQNIKTTIKPSETGIEQQEMGATMDNLSATIISSNFWPPIQDEDLTLPAPVDQLLTDYANRYHELKTPRKLLWKKNLGTVKLEL QFEDREVQFNVTPIHAAIIMQFQDQTSWTSNQLANTLGVPVDVLNRRINFWISKAYASIQGIIAESLGTEPNDNVFTLVEGNADAGKNAGVIGTCEELLP VDDEGESSVASVEDQLRKEMTVYEQYIMGMLKNFGSMALDRIHHTLKIFCVADAPYDKSLQQLQSFLSGLVLEEKVELRDGMYFLKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G04660		APC2	anaphase-promoting complex/cyc...		Lus10026619 [exp]	0	1
AT2G40030		NRPE1, DMS5, AT...	DEFECTIVE IN MERISTEM SILENCIN...		Lus10016332 [exp]	1.4	0.9581
AT1G75310		AUL1	auxilin-like 1, auxin-like 1 p...		Lus10010642 [exp]	3.2	0.9459
AT5G25590			Protein of unknown function (D...		Lus10037902 [exp]	3.9	0.9472
AT1G75310		AUL1	auxilin-like 1, auxin-like 1 p...		Lus10033205 [exp]	5.3	0.9318
AT3G51290			Protein of unknown function (D...		Lus10041885 [exp]	6.0	0.9466
AT4G17000			unknown protein		Lus10035651 [exp]	6.0	0.9558
AT5G15920		EMB2782, SMC5	EMBRYO DEFECTIVE 2782, structu...		Lus10039590 [exp]	6.2	0.9274
AT2G45340			Leucine-rich repeat protein ki...		Lus10004032 [exp]	7.1	0.9312
AT2G05760			Xanthine/uracil permease famil...		Lus10030014 [exp]	11.0	0.9330
AT3G21100			RNA-binding (RRM/RBD/RNP motif...		Lus10005023 [exp]	11.2	0.9350

Compare expression of checked genes

Lus10026619 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.