Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14060 90 / 6e-23 GCK domain-containing protein (.1) AT5G02210 66 / 8e-14 GCK domain-containing protein (.1) AT5G57640 65 / 4e-13 GCK domain-containing protein (.1) AT5G57570 61 / 2e-12 GCK domain-containing protein (.1) AT1G23201 51 / 3e-08 unknown protein AT1G14048 49 / 6e-08 GCK domain-containing protein (.1) AT2G03230 42 / 4e-05 GCK domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030441 [exp] 165 / 5e-52 AT1G14060 97 / 3e-25 GCK domain-containing protein (.1) Lus10037148 [exp] 86 / 9e-22 AT1G14060 79 / 4e-19 GCK domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G081400 [exp] 110 / 3e-31 AT1G14060 99 / 8e-27 GCK domain-containing protein (.1) Potri.013G109100 [exp] 109 / 9e-31 AT1G14060 100 / 5e-27 GCK domain-containing protein (.1) Potri.013G099100 [exp] 105 / 4e-29 AT1G14060 92 / 2e-23 GCK domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07802 [flax] [poplar] GCK GCK domain
Representative CDS sequence Show only first row Show all	>Lus10026621 pacid=23164275 polypeptide=Lus10026621 locus=Lus10026621.g ID=Lus10026621.BGIv1.0 annot-version=v1.0 ATGGGAGCTTACTTTTCTTCTTCTTCATCTTCAACCACCAAAGAAGCTTCCTCATCAGCAGCGAATTCAACTTCGCCGCCGGAGATTCCACCCGCCGACA TGTCGTCGCCTTCTCCCGATCCGAAACGCAAGGAGGAGGAGGAGCAAGAGACTACGGCGGCGGAATCGGAGCAATTGAAGAAGGAGGAGGATGGGGAAGA GGGGGAGGAGGAGGAAGGAGAGTGTGGGTTCTGCTTGTTTATGAAAGGAGGAGCTTGCAAGGACTCATTTATAGCTTGGGAGGATTGCGTGAAGGACGCG GAGGATGAGAAGGTTGACCTGGTGGCGAAGTGTTCTGAGGCGACTAGGATTTTGAAATTGTGCCTCGACGCGAATCCTGATTACTACGAGCCGATCTTGA GGGCGGAGAAGAGTGCGGAGGAGCAGGCGATGAAGGAGATTCGGGAGGAAGAGGAGCAGCGGAACGCTGCGGCTTCGACGGCGGCGGCGGCCGCGGCGGG GGGATCATCCGACGGGNNNNNGGCGGAGGGATAA
AA sequence Show only first row Show all	>Lus10026621 pacid=23164275 polypeptide=Lus10026621 locus=Lus10026621.g ID=Lus10026621.BGIv1.0 annot-version=v1.0 MGAYFSSSSSSTTKEASSSAANSTSPPEIPPADMSSPSPDPKRKEEEEQETTAAESEQLKKEEDGEEGEEEEGECGFCLFMKGGACKDSFIAWEDCVKDA EDEKVDLVAKCSEATRILKLCLDANPDYYEPILRAEKSAEEQAMKEIREEEEQRNAAASTAAAAAAGGSSDGXXAEG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G14060			GCK domain-containing protein ...		Lus10026621 [exp]	0	1
AT3G57560		NAGK	N-acetyl-l-glutamate kinase (....		Lus10030601 [exp]	4.0	0.9147
AT4G27070		TSB2	tryptophan synthase beta-subun...		Lus10011154 [exp]	4.7	0.9188
AT4G13850		ATGRP2, GR-RBP2	glycine rich protein 2, glycin...		Lus10016639 [exp]	4.7	0.8947
AT1G74470			Pyridine nucleotide-disulphide...		Lus10008405 [exp]	7.7	0.9077
AT1G65030			Transducin/WD40 repeat-like su...		Lus10038299 [exp]	8.1	0.9152
AT5G64670			Ribosomal protein L18e/L15 sup...		Lus10023078 [exp]	10.0	0.9179
AT4G00930		CIP4.1	COP1-interacting protein 4.1 (...		Lus10011397 [exp]	10.1	0.9115
AT1G07130		STN1, ATSTN1	Nucleic acid-binding, OB-fold-...		Lus10042621 [exp]	11.4	0.8717
AT3G46740		MAR1, TOC75-III...	MODIFIER OF ARG1 1, translocon...		Lus10016508 [exp]	11.4	0.8825
AT2G37060	CCAAT	NF-YB8	"nuclear factor Y, subunit B8"...		Lus10015058 [exp]	12.2	0.8883

Compare expression of checked genes

Lus10026621 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.