Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14040 1009 / 0 EXS (ERD1/XPR1/SYG1) family protein (.1) AT2G03240 952 / 0 EXS (ERD1/XPR1/SYG1) family protein (.1) AT2G03260 892 / 0 EXS (ERD1/XPR1/SYG1) family protein (.1) AT1G26730 852 / 0 EXS (ERD1/XPR1/SYG1) family protein (.1) AT1G35350 838 / 0 EXS (ERD1/XPR1/SYG1) family protein (.1) AT2G03250 833 / 0 EXS (ERD1/XPR1/SYG1) family protein (.1) AT4G25350 781 / 0 SHB1 SHORT HYPOCOTYL UNDER BLUE1, EXS (ERD1/XPR1/SYG1) family protein (.1) AT3G29060 707 / 0 EXS (ERD1/XPR1/SYG1) family protein (.1) AT1G69480 702 / 0 EXS (ERD1/XPR1/SYG1) family protein (.1) AT1G68740 395 / 4e-126 PHO1;H1 EXS (ERD1/XPR1/SYG1) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030439 [exp] 1435 / 0 AT1G14040 1127 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10030438 [exp] 1172 / 0 AT1G14040 976 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10030440 [exp] 1158 / 0 AT1G14040 1048 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10037147 [exp] 1052 / 0 AT1G14040 1071 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10036779 [exp] 1050 / 0 AT1G14040 1080 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10000203 [exp] 597 / 0 AT1G14040 610 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10036781 [exp] 544 / 0 AT1G14040 561 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10019230 [exp] 493 / 5e-166 AT1G69480 676 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10021164 [exp] 410 / 1e-131 AT3G23430 1066 / 0.0 ARABIDOPSIS PHOSPHATE 1, phosphate 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G090400 [exp] 1079 / 0 AT1G14040 1037 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.010G165800 [exp] 1079 / 0 AT1G14040 1032 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.010G165300 [exp] 1073 / 0 AT1G14040 1022 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.010G164900 [exp] 1046 / 0 AT1G14040 992 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.017G086800 [exp] 846 / 0 AT3G29060 853 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.016G032900 [exp] 823 / 0 AT1G14040 865 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.008G090300 [exp] 633 / 0 AT1G69480 831 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.008G110800 [exp] 412 / 2e-132 AT1G68740 1096 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.010G132300 [exp] 409 / 4e-131 AT1G68740 1139 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.010G069000 [exp] 397 / 5e-127 AT3G23430 1069 / 0.0 ARABIDOPSIS PHOSPHATE 1, phosphate 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03105 [flax] [poplar] SPX SPX domain CL0182 [flax] [poplar] IT PF03124 [flax] [poplar] EXS EXS family
Representative CDS sequence Show only first row Show all	>Lus10026623 pacid=23164221 polypeptide=Lus10026623 locus=Lus10026623.g ID=Lus10026623.BGIv1.0 annot-version=v1.0 ATGAAGTTCGGGAAGGAATTCACGGCACAAATGGTGCCGGAATGGCAAGAGGCATACATGGACTACAACTTCCTCAAAACCCTCTTAAAGGAAATCCAAA AGTTCAGACAAAGAACCAAACCACCATCAACCCAAACCGGTGGTGTTGGAGGTGCCTTGAGCCGGAAGTTAACTCTCTACAGAGCCTTCAGTGGCTTGAC CACCAACCACCACACCAGCTACACCCCTATAAGCCCTTCCGATGTTGACATCGAGAGCCAGGCGATCCTAGTCAACCCTGTGAACCACGAAGGAGAAGGC GCTCATCAGAGCTACCAGACGACGTTTCTGATGGCATCGGACTCTGGGGGAGAGTATGAGCTGGTGTATTTCAGGAGGCTGGATGATGAGTTCAACAAGG TGAACAAGTTCTACATGGGGAAAGTGGAGGAAGTTCTGAAAGAGGCTGATAACTTGAACAAGCAAATGGATGCCTTGATTGCATTTCGGATTAAGGTCGA GAACCCGACCGGTTGGTCTCATGAAGACAGAACAGGGGAGATGACTAGGCTTGCTTCTGATGTTGCTGCCTCTGCTGCTGCCTTGCACGCCACCACTCCT TCTGGAGCCAGAGCCAGCAGAAGATCTCCGAGTCTGGATGCGATCGATGAAGGATCGATCGGCAACGAACAATCTTCGGATGGCTCGAGTCACGACGAAG AAGAACAACAACAGATGAAGAGGAACAAGATTAAACTTCCACCTACAAGGAAGCCACATAGCATGAATGTTGTGAGGAGACCAGCTCCATTACAAGTTCT ACAGAACGTCCAGATAAACAATGCCAAGGAAACACCAAGATCCACCATTAAAGGGTTCCTCAATGTTCCGAGCCATACCGAGCTGAAGTTCACCCGGGAG AATCTGAGGCGAGTCGAGGAGCAGCTCAAGCGCGCCTTCGTTGAGTTCTACCAGAAGCTCAGGCTCCTCAAGAGCTACAGCTTCTTGAACGCCCTGGCAT TTTCCAAGATCATGAAGAAGTATGATAAGATTACTTCAAGGGGTGCATCAAAGGCTTACATGAAAATGGTGGATAACTCTTACCTAGGAAGTTCGGATGA GGTTACGAAGCTGATGGAGAGGGTAGAAGCGACATTCATCAAGCATTTCTCGAACGCGAATCGGAGCAAAGGGATGAACATCTTGAGGCCTAAAGATAAA AGAGAGAGGCATAGAACAACATTTACCATGGGTTTCCTCTCTGGCTGCACTGCAGCACTTCTGATAGCACTAGTACTAATCTTTCGGGCTCACAAAATCA TGGAGGAGCCCGGGAGAGAACAGTACATGCAGACCATGTTCCCACTCTACAGCTTGTTCGGATTCATCGTTCTGCACATTGTCATGTACGCTGCGAACAT CTTCTTCTGGAGGCGATACCGGGTGAACTACTCCTTCATATTCGGGTTCAAGCAGGGTTCTGAGCTGGGATACCGTCAAGTGTTCCTCGTGGCATTCGGT ATAGCAGTCTTGGCACTTCTTAGTATACTCTCGAATCTCGACATGGAAATGGACCCCGTCACGAAGGATTACAAGGCCTTTACAGAGCTCGTCCCTCTCC TCCTGATCAGTCTGCTTATGACCTTGCTGTTCTTGCCATTGAATATATTGTATCGCTCCGCTCGATTCTTCCTACTCACTTGTATCCTCCACTGCATAGC TGCCCCCCTCTACAAGGTCACGCTACCGGATTTCTTCTTGGCAGATCAGCTGACTAGCCAGGTCCAAGCAATAAGGAGCTTAGAGTTCTACATCTGCTAC TACGGGTGGGGAGACTTTAAGCACAGGAAGAACACATGCCCGGACAGCGGAGTCTACAACACATTCTACTTCATTGTGGCAGTGATCCCTTACATGGCAC GCCTTCTCCAGTGCCTTCGGAGGATCTTGAACAAAGGCGTCGGGTGGAGGGTGATCGCCTGGGTGTTCTCGGCCATTGCAGCCATTGGTGGTACTTACTG GGACCTTGTCTACGACTGGGGACTCCTTCAGCGCGGTTCGAAGAACCGGTGGCTCCGGGACAAGCTCCTTGTGCCGCACAAGAGTGTTTATTATGCAGCC ATGGTGTTGAATGTGTTGCTGAGATTCGCGTGGCTGCAGACGGTGCTCAACTTTAACTTCACTTTCTTGCACAGGCAGACTTTGATCGCCATTGTTGCGA GCTTGGAGATCATTCGCCGCGGCATCTGGAACTTCTTTAGGTTGGAGAATGAGCATCTACACAATGAAGGGAAATACAGAGCATTCAAATCAGTCCCATT GCCTTTCAATTACAATGAAGACGATGACAAAGATGAGTAG
AA sequence Show only first row Show all	>Lus10026623 pacid=23164221 polypeptide=Lus10026623 locus=Lus10026623.g ID=Lus10026623.BGIv1.0 annot-version=v1.0 MKFGKEFTAQMVPEWQEAYMDYNFLKTLLKEIQKFRQRTKPPSTQTGGVGGALSRKLTLYRAFSGLTTNHHTSYTPISPSDVDIESQAILVNPVNHEGEG AHQSYQTTFLMASDSGGEYELVYFRRLDDEFNKVNKFYMGKVEEVLKEADNLNKQMDALIAFRIKVENPTGWSHEDRTGEMTRLASDVAASAAALHATTP SGARASRRSPSLDAIDEGSIGNEQSSDGSSHDEEEQQQMKRNKIKLPPTRKPHSMNVVRRPAPLQVLQNVQINNAKETPRSTIKGFLNVPSHTELKFTRE NLRRVEEQLKRAFVEFYQKLRLLKSYSFLNALAFSKIMKKYDKITSRGASKAYMKMVDNSYLGSSDEVTKLMERVEATFIKHFSNANRSKGMNILRPKDK RERHRTTFTMGFLSGCTAALLIALVLIFRAHKIMEEPGREQYMQTMFPLYSLFGFIVLHIVMYAANIFFWRRYRVNYSFIFGFKQGSELGYRQVFLVAFG IAVLALLSILSNLDMEMDPVTKDYKAFTELVPLLLISLLMTLLFLPLNILYRSARFFLLTCILHCIAAPLYKVTLPDFFLADQLTSQVQAIRSLEFYICY YGWGDFKHRKNTCPDSGVYNTFYFIVAVIPYMARLLQCLRRILNKGVGWRVIAWVFSAIAAIGGTYWDLVYDWGLLQRGSKNRWLRDKLLVPHKSVYYAA MVLNVLLRFAWLQTVLNFNFTFLHRQTLIAIVASLEIIRRGIWNFFRLENEHLHNEGKYRAFKSVPLPFNYNEDDDKDE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G14040			EXS (ERD1/XPR1/SYG1) family pr...		Lus10026623 [exp]	0	1
AT3G07840			Pectin lyase-like superfamily ...		Lus10043087 [exp]	3.2	0.8410
AT3G02230		ATRGP1, RGP1	ARABIDOPSIS THALIANA REVERSIBL...		Lus10034376 [exp]	6.0	0.8350
AT1G20510		OPCL1	OPC-8:0 CoA ligase1 (.1.2)		Lus10002535 [exp]	6.0	0.7888
AT1G52560			HSP20-like chaperones superfam...		Lus10023653 [exp]	6.2	0.8614
AT1G71490			Tetratricopeptide repeat (TPR)...		Lus10008347 [exp]	10.8	0.6695
AT5G04220		SYT3, NTMCTYPE1...	synaptotagmin 3, Calcium-depen...		Lus10009226 [exp]	11.0	0.8263
AT3G02125			unknown protein		Lus10013196 [exp]	13.6	0.8133
AT2G29090		CYP707A2	"cytochrome P450, family 707, ...		Lus10016515 [exp]	14.5	0.8169
AT2G43590			Chitinase family protein (.1)		Lus10032794 [exp]	14.7	0.8133
					Lus10005955 [exp]	20.2	0.7966

Compare expression of checked genes

Lus10026623 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.