Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14020 768 / 0 O-fucosyltransferase family protein (.1) AT2G03280 699 / 0 O-fucosyltransferase family protein (.1.2) AT5G15740 613 / 0 RRT1 O-fucosyltransferase family protein (.1) AT3G02250 601 / 0 O-fucosyltransferase family protein (.1) AT2G37980 397 / 6e-132 O-fucosyltransferase family protein (.1) AT3G54100 396 / 9e-132 O-fucosyltransferase family protein (.1) AT5G35570 394 / 7e-131 O-fucosyltransferase family protein (.1) AT1G22460 381 / 7e-127 O-fucosyltransferase family protein (.1) AT5G01100 381 / 4e-126 O-fucosyltransferase family protein (.1) AT5G64600 374 / 1e-124 O-fucosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030437 [exp] 963 / 0 AT1G14020 760 / 0.0 O-fucosyltransferase family protein (.1) Lus10037144 [exp] 885 / 0 AT1G14020 779 / 0.0 O-fucosyltransferase family protein (.1) Lus10036785 [exp] 868 / 0 AT1G14020 772 / 0.0 O-fucosyltransferase family protein (.1) Lus10021717 [exp] 628 / 0 AT5G15740 752 / 0.0 O-fucosyltransferase family protein (.1) Lus10034651 [exp] 622 / 0 AT5G15740 754 / 0.0 O-fucosyltransferase family protein (.1) Lus10007975 [exp] 619 / 0 AT5G15740 772 / 0.0 O-fucosyltransferase family protein (.1) Lus10013503 [exp] 617 / 0 AT5G15740 765 / 0.0 O-fucosyltransferase family protein (.1) Lus10036832 [exp] 541 / 0 AT5G15740 591 / 0.0 O-fucosyltransferase family protein (.1) Lus10019195 [exp] 533 / 0 AT5G15740 587 / 0.0 O-fucosyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G164700 [exp] 801 / 0 AT1G14020 781 / 0.0 O-fucosyltransferase family protein (.1) Potri.008G090600 [exp] 791 / 0 AT1G14020 776 / 0.0 O-fucosyltransferase family protein (.1) Potri.017G101300 [exp] 638 / 0 AT5G15740 837 / 0.0 O-fucosyltransferase family protein (.1) Potri.004G113500 [exp] 624 / 0 AT5G15740 801 / 0.0 O-fucosyltransferase family protein (.1) Potri.015G048100 [exp] 612 / 0 AT5G15740 716 / 0.0 O-fucosyltransferase family protein (.1) Potri.012G064200 [exp] 603 / 0 AT5G15740 733 / 0.0 O-fucosyltransferase family protein (.1) Potri.005G161800 [exp] 412 / 2e-139 AT1G22460 678 / 0.0 O-fucosyltransferase family protein (.1) Potri.016G109700 [exp] 408 / 4e-135 AT2G37980 741 / 0.0 O-fucosyltransferase family protein (.1) Potri.002G100400 [exp] 391 / 4e-131 AT1G22460 663 / 0.0 O-fucosyltransferase family protein (.1) Potri.006G095300 [exp] 394 / 8e-131 AT2G37980 722 / 0.0 O-fucosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF10250 [flax] [poplar] O-FucT GDP-fucose protein O-fucosyltransferase
Representative CDS sequence Show only first row Show all	>Lus10026624 pacid=23164313 polypeptide=Lus10026624 locus=Lus10026624.g ID=Lus10026624.BGIv1.0 annot-version=v1.0 ATGGAGATTAGATCCGAGAGCGTCGGGCTGAGGTCGGAGAAGCTTGCTGGTGGTGTTGGTGGTGGTGGGTCGGGTCCGGGTAATCCGAGGACCCGGTTAC AGGTCTGGTTCATAAGGGTTTGCTCCAGCATTCTGGTATGGACTTGTTTGGTTCAGCTGCTGGCGGTTGGAGAGCTTTGGCGCCCGCGTTTCGTCACTAA TTTTACTAGTAGGTTCACTCAGATCGCCGCCGGTGATCCTCTTCAATTCCAGCCGCCGCCGCCTCTTCCTCCGGCAAGAAATTACACGACCAATGGCTTT CTTAGGGTATCATGCAACGGTGGCTTGAATCAAATGCGTTCAGAGATTTGTGATATGGTGGCAGTTGCCCGGCTTTTGAATCTTACTTTGCTTGTTCCAG AGCTTGATAAAACATCCTTTTGGGCTGACCCCAGCAATTTTGAAGACATCTTTGATGTGAGACATTTTATCGACTCGCTCAGAGACGAAGTTCGAATTGT CAGAAGACTGCCAAAGAAGATCAGTAAGAAATACAGATATAAAGTTTTCGAGATGCCTCCGATTAGCTGGTCAAACGAAAAGTACTATCTACAACAGATT CTGCCGCTGTTCAACAAGTCGAAGGTGCTACACTTCAACAGGACCGACGCACGCCTGGCGAACAATATGATCCCACTTGAACTCCAGAAGCTCAGGTGTC GAGTCAATTTCCAGGCGCTAAAATTCACTCCACAAATCGAGAGCTTGGGGCGCAAATTGGTACGAATCCTCCAGGAAAGGGGACCGTTCGTGGCTTTGCA TCTGAGATATGAGATGGACATGCTGGCTTTCTCCGGTTGTACTCATGGCTGTTCACAGCAAGAAGCGGAAGAGCTTAAACGGCTAAGGTATGCATATCCT TGGTGGAGAGAAAAGGAGATAAACTCAGAGGAGAGAAGATCTCAAGGTTTATGCCCGTTGACTCCAGAAGAAGCAGCTTTAGTTCTACAAGCGTTAGGGA TTGACAATGAGACTCAGATATACATTGCAGCTGGTGAAATCTATGGCAGCGAACGTAGACTCGCATCATTACGAGCTGCATTCCCTCGAGTCATGAGAAA GGAAACACTTTTGGATCCAATGGAGCTACAGCAGTTCCAGAACCATTCATCTCAAATGGCTGCCTTGGACTTCATGGTCTCAGTAGCCAGCAACACTTTC ATCCCTACCTACGACGGGAACATGGCCAAAGTGGTCGAAGGCCACCGCAGATATCTAGGGTTCAAGAAGACGATCCTCCTCGATCGAAGAAAGCTCGTCG AGCTCCTGAACTTGCACCAGAATGGTAAGCTACCGTGGAGCGAGTTTGCATCCGGCGTCAGGGAGGCACACCGGAAGAGGATGGGGCAGCCTGTTCGTCG GAGGGTGGTTCCCGACAAACCCAAAGAGGAGGATTACTTCTACTCGAACCCTCAAGAGTGTCTTTGCGAGGGGACGGCGAGCTGTGATGATCTGCTCGGA GCTCATAACTCGAGTTCTGTTCGGTGA
AA sequence Show only first row Show all	>Lus10026624 pacid=23164313 polypeptide=Lus10026624 locus=Lus10026624.g ID=Lus10026624.BGIv1.0 annot-version=v1.0 MEIRSESVGLRSEKLAGGVGGGGSGPGNPRTRLQVWFIRVCSSILVWTCLVQLLAVGELWRPRFVTNFTSRFTQIAAGDPLQFQPPPPLPPARNYTTNGF LRVSCNGGLNQMRSEICDMVAVARLLNLTLLVPELDKTSFWADPSNFEDIFDVRHFIDSLRDEVRIVRRLPKKISKKYRYKVFEMPPISWSNEKYYLQQI LPLFNKSKVLHFNRTDARLANNMIPLELQKLRCRVNFQALKFTPQIESLGRKLVRILQERGPFVALHLRYEMDMLAFSGCTHGCSQQEAEELKRLRYAYP WWREKEINSEERRSQGLCPLTPEEAALVLQALGIDNETQIYIAAGEIYGSERRLASLRAAFPRVMRKETLLDPMELQQFQNHSSQMAALDFMVSVASNTF IPTYDGNMAKVVEGHRRYLGFKKTILLDRRKLVELLNLHQNGKLPWSEFASGVREAHRKRMGQPVRRRVVPDKPKEEDYFYSNPQECLCEGTASCDDLLG AHNSSSVR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G14020			O-fucosyltransferase family pr...		Lus10026624 [exp]	0	1
AT4G34490		ATCAP1	cyclase associated protein 1 (...		Lus10026338 [exp]	1.0	0.9457
AT4G23490			Protein of unknown function (D...		Lus10032293 [exp]	2.4	0.9307
AT1G01225			NC domain-containing protein-r...		Lus10005981 [exp]	2.8	0.9267
AT5G09620			Octicosapeptide/Phox/Bem1p fam...		Lus10042925 [exp]	3.2	0.9341
AT5G11710			ENTH/VHS family protein (.1)		Lus10007460 [exp]	3.2	0.9245
AT1G51630			O-fucosyltransferase family pr...		Lus10035749 [exp]	4.2	0.9239
AT4G34490		ATCAP1	cyclase associated protein 1 (...		Lus10042324 [exp]	6.9	0.8860
AT4G10840			Tetratricopeptide repeat (TPR)...		Lus10017304 [exp]	6.9	0.9202
AT5G19130			GPI transamidase component fam...		Lus10014561 [exp]	8.9	0.8744
AT5G15050			Core-2/I-branching beta-1,6-N-...		Lus10032190 [exp]	9.2	0.9212

Compare expression of checked genes

Lus10026624 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.