Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G26690 196 / 2e-63 emp24/gp25L/p24 family/GOLD family protein (.1) AT1G69460 185 / 6e-59 emp24/gp25L/p24 family/GOLD family protein (.1) AT1G14010 174 / 8e-55 emp24/gp25L/p24 family/GOLD family protein (.1) AT3G29070 171 / 3e-53 emp24/gp25L/p24 family/GOLD family protein (.1) AT2G03290 167 / 3e-52 emp24/gp25L/p24 family/GOLD family protein (.1) AT2G03040 131 / 1e-38 emp24/gp25L/p24 family/GOLD family protein (.1) AT1G09580 125 / 1e-35 emp24/gp25L/p24 family/GOLD family protein (.1) AT1G21900 119 / 3e-33 emp24/gp25L/p24 family/GOLD family protein (.1) AT1G57620 112 / 9e-31 emp24/gp25L/p24 family/GOLD family protein (.1) AT3G10780 103 / 3e-27 emp24/gp25L/p24 family/GOLD family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030436 [exp] 280 / 6e-96 AT1G26690 263 / 2e-89 emp24/gp25L/p24 family/GOLD family protein (.1) Lus10037143 [exp] 262 / 5e-90 AT1G26690 249 / 2e-85 emp24/gp25L/p24 family/GOLD family protein (.1) Lus10036786 [exp] 247 / 4e-83 AT1G26690 275 / 3e-94 emp24/gp25L/p24 family/GOLD family protein (.1) Lus10005227 [exp] 160 / 3e-49 AT1G26690 231 / 4e-77 emp24/gp25L/p24 family/GOLD family protein (.1) Lus10030693 [exp] 158 / 9e-49 AT1G26690 218 / 2e-72 emp24/gp25L/p24 family/GOLD family protein (.1) Lus10022972 [exp] 117 / 2e-32 AT1G09580 297 / 3e-103 emp24/gp25L/p24 family/GOLD family protein (.1) Lus10041939 [exp] 115 / 2e-31 AT1G21900 286 / 1e-98 emp24/gp25L/p24 family/GOLD family protein (.1) Lus10001615 [exp] 114 / 2e-31 AT1G09580 294 / 4e-102 emp24/gp25L/p24 family/GOLD family protein (.1) Lus10039381 [exp] 41 / 0.0003 AT3G22845 350 / 1e-124 emp24/gp25L/p24 family/GOLD family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G164600 [exp] 219 / 1e-72 AT1G69460 272 / 3e-93 emp24/gp25L/p24 family/GOLD family protein (.1) Potri.008G090700 [exp] 217 / 2e-71 AT1G26690 308 / 1e-107 emp24/gp25L/p24 family/GOLD family protein (.1) Potri.017G086900 [exp] 188 / 3e-60 AT1G26690 282 / 2e-97 emp24/gp25L/p24 family/GOLD family protein (.1) Potri.004G127200 [exp] 184 / 1e-58 AT1G26690 253 / 5e-86 emp24/gp25L/p24 family/GOLD family protein (.1) Potri.018G145544 [exp] 148 / 2e-45 AT1G26690 194 / 8e-64 emp24/gp25L/p24 family/GOLD family protein (.1) Potri.002G085300 [exp] 135 / 2e-39 AT1G09580 280 / 2e-96 emp24/gp25L/p24 family/GOLD family protein (.1) Potri.001G210900 [exp] 123 / 6e-35 AT1G09580 268 / 7e-92 emp24/gp25L/p24 family/GOLD family protein (.1) Potri.003G019300 [exp] 119 / 2e-33 AT1G09580 275 / 1e-94 emp24/gp25L/p24 family/GOLD family protein (.1) Potri.010G081700 [exp] 41 / 0.0002 AT3G22845 366 / 1e-130 emp24/gp25L/p24 family/GOLD family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0521 [flax] [poplar] GOLD-like PF01105 [flax] [poplar] EMP24_GP25L emp24/gp25L/p24 family/GOLD
Representative CDS sequence Show only first row Show all	>Lus10026625 pacid=23164235 polypeptide=Lus10026625 locus=Lus10026625.g ID=Lus10026625.BGIv1.0 annot-version=v1.0 ATGATCGTCGGGAAGTACACCGTCATCAACCCCAACGACGGCCAGCCCTTGCCCGATCACCTCAAGCTCACCGTCAGGGTGACGTCGAGCTATGGGAACA GTTTTCATACGGCGGACAATGTGGAGTCGGGGCAGTTTGCGTTCACGGCTAGCGAGACGAGGGATTACATGGCGTGCTTTTACGCGGCGTGGCATACTCC GGCGGTGGCTACCACGGTGGAGTTTGAGTGGAGTAGTGGTGTGGCTGCTAAGGACTGGAATAGCATCGCCAAGAAAGGTTCTATTGAGGCAATGGAACTG GAGGTGAAGAAACTGTACGACACCACTCTTTCAATCCAAGAGGAGATTCTGTGGTTACGTCAGAGGGAAGAAGAGATGCAGGAACTGAACAGATCCACCA ACTCAACGATGGGGTGGCTTGGTATGTTCTCTCTGTTCATCTCTTTATCCTGTCGCCCGATTCCAGTTTTGGCACCTCAAGACCTTTTTCGAGAAGAAGA AGATCATTTAACTTCCCTTTCGAAACAATTTTTCCTTCGTTCCAGTTCCATGGTTGCCCCATTTACTTCGTTGTATAAGTTACAGAAGTGTATTAGTCAA ATACGAACTTTTCGTACTAAAAGCTATTGCAAGTACGATACGAACCTGTTCCGCCTAGATGCCTGA
AA sequence Show only first row Show all	>Lus10026625 pacid=23164235 polypeptide=Lus10026625 locus=Lus10026625.g ID=Lus10026625.BGIv1.0 annot-version=v1.0 MIVGKYTVINPNDGQPLPDHLKLTVRVTSSYGNSFHTADNVESGQFAFTASETRDYMACFYAAWHTPAVATTVEFEWSSGVAAKDWNSIAKKGSIEAMEL EVKKLYDTTLSIQEEILWLRQREEEMQELNRSTNSTMGWLGMFSLFISLSCRPIPVLAPQDLFREEEDHLTSLSKQFFLRSSSMVAPFTSLYKLQKCISQ IRTFRTKSYCKYDTNLFRLDA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G26690			emp24/gp25L/p24 family/GOLD fa...		Lus10026625 [exp]	0	1
AT5G46090			Protein of unknown function (D...		Lus10013933 [exp]	5.4	0.8824
AT5G18310			unknown protein		Lus10042520 [exp]	6.2	0.8539
AT4G23310		CRK23	cysteine-rich RLK (RECEPTOR-li...		Lus10023335 [exp]	8.2	0.8824
AT5G39670			Calcium-binding EF-hand family...		Lus10012199 [exp]	12.5	0.8387
AT2G33480	NAC	ANAC041	NAC domain containing protein ...		Lus10041534 [exp]	12.7	0.8585
					Lus10038613 [exp]	13.6	0.8399
					Lus10034979 [exp]	16.9	0.8667
					Lus10022031 [exp]	17.0	0.8563
AT3G60160		ATMRP9, ABCC9	ATP-binding cassette C9, multi...		Lus10022808 [exp]	17.9	0.8580
AT3G54100			O-fucosyltransferase family pr...		Lus10021119 [exp]	18.0	0.8772

Compare expression of checked genes

Lus10026625 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.