Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14000 720 / 0 VIK VH1-interacting kinase (.1) AT3G58760 290 / 8e-94 Integrin-linked protein kinase family (.1) AT4G18950 282 / 8e-91 Integrin-linked protein kinase family (.1) AT2G31800 246 / 2e-76 Integrin-linked protein kinase family (.1) AT2G43850 238 / 3e-73 Integrin-linked protein kinase family (.1.2) AT3G59830 229 / 4e-70 Integrin-linked protein kinase family (.1) AT2G17700 182 / 1e-51 STY8 serine/threonine/tyrosine kinase 8, ACT-like protein tyrosine kinase family protein (.1) AT4G35780 181 / 2e-51 STY17 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) AT4G38470 179 / 1e-50 STY46 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) AT4G31170 172 / 4e-49 Protein kinase superfamily protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030435 [exp] 807 / 0 AT1G14000 748 / 0.0 VH1-interacting kinase (.1) Lus10029277 [exp] 284 / 3e-91 AT4G18950 601 / 0.0 Integrin-linked protein kinase family (.1) Lus10030387 [exp] 280 / 3e-90 AT3G58760 315 / 2e-103 Integrin-linked protein kinase family (.1) Lus10037851 [exp] 268 / 2e-85 AT3G58760 305 / 2e-99 Integrin-linked protein kinase family (.1) Lus10008350 [exp] 207 / 5e-61 AT2G31800 753 / 0.0 Integrin-linked protein kinase family (.1) Lus10027107 [exp] 193 / 2e-55 AT2G31800 709 / 0.0 Integrin-linked protein kinase family (.1) Lus10022653 [exp] 184 / 5e-53 AT4G38470 673 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Lus10028590 [exp] 186 / 8e-53 AT4G35780 506 / 9e-175 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Lus10012517 [exp] 185 / 2e-52 AT4G35780 754 / 0.0 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G090800 [exp] 738 / 0 AT1G14000 743 / 0.0 VH1-interacting kinase (.1) Potri.010G164500 [exp] 738 / 0 AT1G14000 757 / 0.0 VH1-interacting kinase (.1) Potri.004G064400 [exp] 288 / 2e-93 AT4G18950 632 / 0.0 Integrin-linked protein kinase family (.1) Potri.002G158950 [exp] 279 / 5e-90 AT4G18950 305 / 1e-99 Integrin-linked protein kinase family (.1) Potri.007G142100 [exp] 240 / 3e-74 AT2G43850 726 / 0.0 Integrin-linked protein kinase family (.1.2) Potri.017G007800 [exp] 236 / 9e-73 AT2G31800 751 / 0.0 Integrin-linked protein kinase family (.1) Potri.005G190200 [exp] 189 / 2e-54 AT4G38470 500 / 2e-172 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Potri.004G179457 [exp] 187 / 2e-54 AT4G38470 654 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Potri.004G179100 [exp] 186 / 4e-54 AT4G35780 612 / 0.0 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Potri.004G179514 [exp] 187 / 3e-53 AT4G38470 786 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [flax] [poplar] Ank PF00023 [flax] [poplar] Ank Ankyrin repeat CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10026626 pacid=23164295 polypeptide=Lus10026626 locus=Lus10026626.g ID=Lus10026626.BGIv1.0 annot-version=v1.0 ATGAGCTCCGGTTCCTCCGCCGGAGGCGGCGCGTCGCCGGCTGAAGACAAGCAGAAGGAGAAGGCGAGAGTGAGCAGGACGTCGATGATACTGTGGCACG CTCACCAAAACGACGTCGCGGCGGTGCGGAAGCTCCTCGAGGAGGATCCGTCTCTGGTCATGGCTAGGGATTACGACAATCGGACTCCTCTCCACGTCGC GTCTCTCCATGGGTGGATCGACGTTGCTACTTGCTTGATCGAGTTCGGCGCCGATGTCAACGCCCAGGATCGTTGGAAGAACACGCCGTTAGCTGATGCA GAAGGAGCTAAGAAGTCTAACATGATTGGGCTGCTGAAGTCTTATGGCGGTTTGTCCTTTGGACAAAATGGTAGCCACTTTGAACCAAAGCCTGTTCCAC CACCTCTACCGAACAAGTGCGACTGGGAAATTGATCCGTCTGAGCTTGACTTCTCGAACTCTGCCATGATTGGGAAGGGATCTTTTGGTGAGATTCTGAA AGCATGTTGGCGGGGAACACCTGTTGCAGTTAAACGTATTCTGCCATCCCTTTCAGATGATAGACTGGTTATCCAGGACTTCAGACATGAAGTTAACTTG CTAGTGAAGCTTCGCCACCCTAACATAGTCCAGTTTCTTGGAGCTGTCACTGAGAAGAAGCCCCTCATGTTAATCACAGAGTATCTTAGAGGAGGTGATC TTCACCAGCATCTCAAGGAAAAAGGTGCCCTTAGTCCCGCCACAGCCATCAACTTCGCAATGGACATTGCCAGAGGAATGGCATATATGCACAATGAACC AAATGTCATAATTCATAGAGACCTAAAACCCAGGAACGTTCTTTTGGTCAACTCCAGTGCAGACCACTTGAAAGTCGGAGATTTCGGACTAAGCAAGCTC ATCAGAGTTCAGAACTCTCATGATGTATACAAAATGACTGGCGAAACAGGAAGTTATCGGTACATGGCTCCTGAAGTTTTCAAGCACCGGAAATACGATA AGAAGGTCGACGTCTTCTCTTTCGCCATGATACTCTACGAGATGATGGAAGGAGAACCGCCACTCGCAAACTACGAGCCATACGAAGCAGCCAAGTACGT ATCAGAAGGCCACCGGCCATCGTTTCGGTCTAAAGGATTCATCCCCGAACTCCGAGATTTAACAGACAGCTGCTGGGCAGCTGACATGAACAGAAGACCT TCGTTCTTGGAAATCCTCAAGAGGCTCGAGAAGATCAAGGAACTCCTACCGTCAGATCACCACTGGTCAATTTTCAACTCTTGA
AA sequence Show only first row Show all	>Lus10026626 pacid=23164295 polypeptide=Lus10026626 locus=Lus10026626.g ID=Lus10026626.BGIv1.0 annot-version=v1.0 MSSGSSAGGGASPAEDKQKEKARVSRTSMILWHAHQNDVAAVRKLLEEDPSLVMARDYDNRTPLHVASLHGWIDVATCLIEFGADVNAQDRWKNTPLADA EGAKKSNMIGLLKSYGGLSFGQNGSHFEPKPVPPPLPNKCDWEIDPSELDFSNSAMIGKGSFGEILKACWRGTPVAVKRILPSLSDDRLVIQDFRHEVNL LVKLRHPNIVQFLGAVTEKKPLMLITEYLRGGDLHQHLKEKGALSPATAINFAMDIARGMAYMHNEPNVIIHRDLKPRNVLLVNSSADHLKVGDFGLSKL IRVQNSHDVYKMTGETGSYRYMAPEVFKHRKYDKKVDVFSFAMILYEMMEGEPPLANYEPYEAAKYVSEGHRPSFRSKGFIPELRDLTDSCWAADMNRRP SFLEILKRLEKIKELLPSDHHWSIFNS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G14000		VIK	VH1-interacting kinase (.1)		Lus10026626 [exp]	0	1
AT3G51370			Protein phosphatase 2C family ...		Lus10041861 [exp]	1.0	0.8442
AT5G07830		ATGUS2	glucuronidase 2 (.1)		Lus10034707 [exp]	2.4	0.7933
AT1G47128		RD21A, RD21	RESPONSIVE TO DEHYDRATION 21A,...		Lus10024801 [exp]	3.7	0.8313
AT5G56610			Phosphotyrosine protein phosph...		Lus10012928 [exp]	5.5	0.8156
AT2G25290		Phox1	Phox1, Octicosapeptide/Phox/Be...		Lus10008035 [exp]	6.3	0.8051
AT5G09890			Protein kinase family protein ...		Lus10005707 [exp]	9.2	0.7877
AT4G20300			Protein of unknown function (D...		Lus10036240 [exp]	11.2	0.7657
AT4G14350			AGC (cAMP-dependent, cGMP-depe...		Lus10021176 [exp]	12.7	0.7853
AT3G52850		VSR1;1, GFS1, B...	VACUOLAR SORTING RECEPTOR 1;1,...		Lus10014176 [exp]	17.3	0.7828
AT5G51070		SAG15, CLPD, ER...	SENESCENCE ASSOCIATED GENE 15,...		Lus10043014 [exp]	17.5	0.7962

Compare expression of checked genes

Lus10026626 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.