Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13980 2313 / 0 VAN7, EMB30, GN VASCULAR NETWORK 7, GNOM, EMBRYO DEFECTIVE 30, sec7 domain-containing protein (.1.2) AT5G39500 1741 / 0 GNL1, ERMO1 ENDOPLASMIC RETICULUM MORPHOLOGY 1, GNOM-like 1 (.1) AT5G19610 1065 / 0 GNL2 GNOM-like 2 (.1) AT1G01960 283 / 3e-77 EDA10 embryo sac development arrest 10, SEC7-like guanine nucleotide exchange family protein (.1) AT3G60860 279 / 5e-76 SEC7-like guanine nucleotide exchange family protein (.1) AT4G38200 267 / 3e-72 SEC7-like guanine nucleotide exchange family protein (.1) AT4G35380 260 / 6e-70 SEC7-like guanine nucleotide exchange family protein (.1) AT3G43300 216 / 2e-56 BEN1, ATMIN7 BFA-VISUALIZED ENDOCYTIC TRAFFICKING DEFECTIVE1, HOPM interactor 7 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030432 [exp] 2865 / 0 AT1G13980 2383 / 0.0 VASCULAR NETWORK 7, GNOM, EMBRYO DEFECTIVE 30, sec7 domain-containing protein (.1.2) Lus10037140 [exp] 2348 / 0 AT1G13980 2274 / 0.0 VASCULAR NETWORK 7, GNOM, EMBRYO DEFECTIVE 30, sec7 domain-containing protein (.1.2) Lus10036789 [exp] 2340 / 0 AT1G13980 2300 / 0.0 VASCULAR NETWORK 7, GNOM, EMBRYO DEFECTIVE 30, sec7 domain-containing protein (.1.2) Lus10034615 [exp] 819 / 0 AT5G19610 1647 / 0.0 GNOM-like 2 (.1) Lus10021771 [exp] 789 / 0 AT5G19610 1727 / 0.0 GNOM-like 2 (.1) Lus10009300 [exp] 323 / 6e-90 AT3G60860 2741 / 0.0 SEC7-like guanine nucleotide exchange family protein (.1) Lus10015863 [exp] 277 / 3e-75 AT4G38200 1880 / 0.0 SEC7-like guanine nucleotide exchange family protein (.1) Lus10022983 [exp] 256 / 1e-68 AT4G38200 2320 / 0.0 SEC7-like guanine nucleotide exchange family protein (.1) Lus10009803 [exp] 253 / 8e-68 AT3G43300 2569 / 0.0 BFA-VISUALIZED ENDOCYTIC TRAFFICKING DEFECTIVE1, HOPM interactor 7 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G078900 [exp] 2446 / 0 AT1G13980 2416 / 0.0 VASCULAR NETWORK 7, GNOM, EMBRYO DEFECTIVE 30, sec7 domain-containing protein (.1.2) Potri.017G078800 [exp] 2227 / 0 AT1G13980 2180 / 0.0 VASCULAR NETWORK 7, GNOM, EMBRYO DEFECTIVE 30, sec7 domain-containing protein (.1.2) Potri.018G075300 [exp] 1035 / 0 AT5G19610 1796 / 0.0 GNOM-like 2 (.1) Potri.014G070600 [exp] 305 / 3e-84 AT3G60860 2664 / 0.0 SEC7-like guanine nucleotide exchange family protein (.1) Potri.002G149200 [exp] 298 / 8e-82 AT3G60860 2689 / 0.0 SEC7-like guanine nucleotide exchange family protein (.1) Potri.004G208400 [exp] 265 / 1e-71 AT4G38200 2354 / 0.0 SEC7-like guanine nucleotide exchange family protein (.1) Potri.009G169800 [exp] 258 / 3e-69 AT4G38200 2335 / 0.0 SEC7-like guanine nucleotide exchange family protein (.1) Potri.006G216900 [exp] 214 / 1e-55 AT3G43300 2728 / 0.0 BFA-VISUALIZED ENDOCYTIC TRAFFICKING DEFECTIVE1, HOPM interactor 7 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01369 [flax] [poplar] Sec7 Sec7 domain
Representative CDS sequence Show only first row Show all	>Lus10026627 pacid=23164363 polypeptide=Lus10026627 locus=Lus10026627.g ID=Lus10026627.BGIv1.0 annot-version=v1.0 ATGGGGCGTTTGAAGATGCAGCCTGGGATAAATTCAATTGAGGAAGAGCCTGAAGACTTGGAAGCAGCCTATGTTAACAAAACTACTTTAGCATGCATGA TCAATGCAGAAGTAGGTTCCGTTCTGGCTGTCATGAGGAGGAATGTAAGATGGGGCGGTCGATATATGTCAGGGGATGATCAGCTAGATCATTCTTTCAT ACAGTCTCTGAAGGCATTGAGGAAGCAGATATTCACATGGCAGCATCCGTGGAATACCATCAATCCAGCGGTGTATCTCCAACCATTTTTGGAAGTGATT CGGTCTGATGAAATTGGCGCACCCATTACTGGGGTTGCTTTGTCATCTGTTTACAAGATCTTGACGCTGGATGTGATTGATAAGAATACTGCAAATGTTG AAGAGGCTATGCACTTGGTTGTTGATGCGGTGACTTCTTGCAGATTTGAGCCGACAGATCCGGCGTCAGAGGAAGTTGTCCTGATGAAATTCCTTCAGGT TCTGCTAGCTTGCATGAAAAGTAAAGCGTCGGTTATGTTGAGCAATCAACATGTTTGTATGATTGTGAACACTTGTTTCCGTATAGTTCATCAATCAGGA AACAAGGGCGAGCTTTTGCAGCGGATGGCTCGGCACACAATGCACGAGCTTATTAGATGCATTTTTGCACATCTTCCTGATGTGGATATTACTGAACGCC CATTGGTAAATGGGGTCAGCACTTCCAAGTCTGAGGTTGGTGGTCCGGATAACAATCATGCATTGGCAAGCAAACAAACAGAAAATGGCCAGTCAACCTC CGTGAGCTTATTATCTGATTCAACTGCTATTGTGGCAAGTCCAATGGAAGAGAGCTCAATAGGCGGTGGTAGTGGAACTGATGCATTTTCTTATGATATG CACCTTATGACTGAGCCATATGGGGTCCCTTGCATGGTGGAAGTATTTCATTTCTTGTGTTCTTTATTAAATGCTGCTGAGCATATGGGAACGGGTCCTA GATCGAACACTATAGCATATGAAGAGGATGTCCCCCTTTTTGCCTTGGGCCTAATTAATTCAGCTATAGAATTGGCCGGACCTTCTTTATGCCATCACCC TAGGTTGCTGACTTTAATTCACGATGAACTCTTCCGGAATCTGATGCAGTTTGGCTTGTCAATGAGCCCCCTTATTCTCTCAATGGTGTGCAGTATAGTA CTGAGCCTGTACCACCATTTGCGTTCTGAAATCAAATTACAACTCGAGGCTTTCTTCTCTTGTGTGATATTGAGATTGGCACAGAGCAAATTTGGTTCTT CATATCAGCAGCAGGAGGTTGCCATGGAGGCTCTAGTAGATTTCTGCAGACAGAAGACCTTCATGGTGGAGATGTATGCTAACTTGGATTGTGACATAAC ATGCAGCAATGTTTTTGAAGAACTTGCTAATTTGTTGTCAAAAAGTGCATTCCCTGTTAATTCTCCTCTGTCTGCAATGCACATTCTTGCATTAGATGGT CTGATTGCTGTAATTCAAGGGATGGCTGAGAGGATAGGGAACGAATCCGAAAACCCCGAGCAGACTCCGGTTGTCCTCGAGGAGTATACACCGTTCTGGA TGGTGAAATGTGACGGCTACAGTGATCCTGATCATTGGGTTCCTTTTGTCCGCAGGAGAAAGTACATTAAGAGAAGGTTGATGATTGGAGCTGACCATTT CAACCGCGATCCCAAGAAGGGGCTAGAATTTCTCCAAGGAACACATCTCTTACCTGAAAAGCTTGACCCACAAAGTGTGGCTTGCTTTTTCAGATACACT GCTGGTCTGGATAAAAACCTTGTTGGGGACTTCCTTGGAAATCACGACGAGTTTTGTGTTCAGGTTCTTCACGAGTTCGCATGGACTTTCGATTTTCAGG ATATGAATCTGGATACAGCTCTCAGACTATTCTTAGAAACTTTCCGGCTTCCAGGTGAATCACAGAAAATCCAGAGGGTGCTCGAGGCATTCTCGGAGAG ATACTATGAACAGTCACCGCAAGTTTTGGCTAACAAGGACGCTGCTCTTTTGTTATCTTACTCAATTATAATGCTCAACACAGATCAGCACAATGTACAG GTGAAGAAAAAGATGACCGAAGAGGATTTTATCCGGAACAATAGGCATATTAACGGAGGCCAGGATTTGCCTCGTGAATTCCTCGGCGAACTTTATCACT CAATTTGCAAGAATGAGATCCGTACAACCCCTGAACAAGGTGCTGGCTTTGCTGAAATGAACCCAAGCCGCTGGATCGACCTGATGCACAAGTCCAAAAA GACTCCCCCTTATATCGTTTCCGATTCCAGAGCCCACCTCGACCGTGACATGTTTGCTATAATGTCCGGTCCAACAATAGCTGCCATCTCTGTTGTGTTT GATCATACAGACCAGGAAGAGGTTTACCAGGCATGTATTGACGGTTTTCTAGCTATTGCAAGGATTTCAGCTTGCCATCATCTCGAAGACGTATTAGATG ATCTAGTTGTGTCTCTCTGCAAGTTCACTTCTCTATTGAATCCCTCGTTTATCGAGGAACCTGTGCTAGCCTTTGGTGATGATGCCAAGGCTAGGATGGC AACCGTGACAGTTTTCACCATCGCCAACCGGTATGGTGACTATATTCGCACTGGATGGAGGAATATCCTCGACTGCATTTTACGATTACACAAACTCGGT CTCTTACCTGCCCGTGTGGCTAGTGACGCAGCTGATGAATCAGAAACCTCTGCTGAACCGGGTCATGGAAAGCCGCCCATTTCGAGTTCTATGTCTTCAG TTCAGATGCAGTCGGCCGGAACTCCCAGGCAATCGTCTGGATTAATGGGTAGGTTCAGTCAACTCTTGTCTCTTGACTCTGAGGAGCCGAGATCTCAACC GACCGAGCAACAACTTGCTGCTCATCAACGTACACTTCAAACTATTCAGACGTGCCACGTAGATAGTATATTCACAGAGAGTAAGTTCTTGCAAGCTGAC TCTTTACTGCAGCTTGCAAGAGCATTGATCTGGGCAGCTGGTCGGCCGCAGAAAGGAAACAACTCCCCCGAAGACGAAGATACAGCAGTATTCTGCCTCG AGTTACTCATTGCCATCACTTTGAACAACCGAGACCGGATCGGTCTCCTTTGGCAAGGCGTCTATGAGCACATAGCCAACATCGTCCAGTCAACTGTGAT GCCGTGTGCTTTAGTAGAGAAGGCTGTTTTCGGCCTTCTCCGAATATGCCAGCGGCTGCTCCCTTACAAAGAAAACCTCGCCGATGAACTCTTGAGGTCG CTCAATCTAGTCTTGAAGCTCGATGCCCGGGTTGCTGATGCTTACTGTGACCAAATCACTCAGGAAGTCAGCCGCCTGGTGAAGGCTAATGCTACGCATA TCAGATCTCAAATGGGGTGGCGGACAATCACGTCCTTGCTTTCGATCACGGCACGCCATCCGGAAGCTTCCGAAGCAGGATTCGACGCTCTGTTGTTTAT AATGACCGGTAGTGCCCACCTTCTGCCGGCTAACTACATCCTCTGCATTGATGCAGCACGACAGTTCTCGGAGTCTCGAGTCGGTCAATCTGAACGGTCT GTACGTGCTCTCGATCTCATGGCAGGTTCCGTGGATTGCTTAACTCAGTGGTCTAAAGAAGCCGAAAATCCGATGCGAGACAATATTGGGGAGATGTGGT TGAGACTGGTACAAGGGCTGAGAAAAGTGTGTCTGGATCAACGAGAAGAAGTTCGAAACCACGCTCTCCTCTCGCTGCAGAAATGTCTAATGGGAGTCGA AGAGATCAACCTCCCGCACGGTCTATGGCTACAGTGCTTCGACATGGTTATCTTCACAATGCTGGACGACTTGCTCGAGATCGCTCAGGGACACTCGCAG AAGGACTACCGAAACATGGAGGGAACTCTTATCGTCGCGTTGAAGCTTCTCTCGAAAGTGTTCCTGCAGCTGTTAGACGAGCTCGCGGAGCTGACCACCT TCTGCAAGCTGTGGCTGGGAGTCCTCACCCGGATGGAGAAGTACATGAAGGTGAAGATTCGGTCGAGGAAGAGCGATAAGCTTCAGGAATCGGTGCCGGA ACTTTTAAAGAACATCTTGCTGGTGATGAAAAGTAAAGGTGTTCTGGTCCAGAGGACTGCCTTAGGTGGGGACAGCTTGTGGGAGCTGACGTGGCTACAC ATGAACAATATTGCTCCGTCGTTGCAGTCTGAGGTGTTTGCAGGTCACGAACTGGAGCAGTCTCGGCAGGTTAAATCTGGTTCGGACGAAACTGGCGATA GTCCCGCTGTAGGATCCGACTCTGCTGGCACTGGCGGATGA
AA sequence Show only first row Show all	>Lus10026627 pacid=23164363 polypeptide=Lus10026627 locus=Lus10026627.g ID=Lus10026627.BGIv1.0 annot-version=v1.0 MGRLKMQPGINSIEEEPEDLEAAYVNKTTLACMINAEVGSVLAVMRRNVRWGGRYMSGDDQLDHSFIQSLKALRKQIFTWQHPWNTINPAVYLQPFLEVI RSDEIGAPITGVALSSVYKILTLDVIDKNTANVEEAMHLVVDAVTSCRFEPTDPASEEVVLMKFLQVLLACMKSKASVMLSNQHVCMIVNTCFRIVHQSG NKGELLQRMARHTMHELIRCIFAHLPDVDITERPLVNGVSTSKSEVGGPDNNHALASKQTENGQSTSVSLLSDSTAIVASPMEESSIGGGSGTDAFSYDM HLMTEPYGVPCMVEVFHFLCSLLNAAEHMGTGPRSNTIAYEEDVPLFALGLINSAIELAGPSLCHHPRLLTLIHDELFRNLMQFGLSMSPLILSMVCSIV LSLYHHLRSEIKLQLEAFFSCVILRLAQSKFGSSYQQQEVAMEALVDFCRQKTFMVEMYANLDCDITCSNVFEELANLLSKSAFPVNSPLSAMHILALDG LIAVIQGMAERIGNESENPEQTPVVLEEYTPFWMVKCDGYSDPDHWVPFVRRRKYIKRRLMIGADHFNRDPKKGLEFLQGTHLLPEKLDPQSVACFFRYT AGLDKNLVGDFLGNHDEFCVQVLHEFAWTFDFQDMNLDTALRLFLETFRLPGESQKIQRVLEAFSERYYEQSPQVLANKDAALLLSYSIIMLNTDQHNVQ VKKKMTEEDFIRNNRHINGGQDLPREFLGELYHSICKNEIRTTPEQGAGFAEMNPSRWIDLMHKSKKTPPYIVSDSRAHLDRDMFAIMSGPTIAAISVVF DHTDQEEVYQACIDGFLAIARISACHHLEDVLDDLVVSLCKFTSLLNPSFIEEPVLAFGDDAKARMATVTVFTIANRYGDYIRTGWRNILDCILRLHKLG LLPARVASDAADESETSAEPGHGKPPISSSMSSVQMQSAGTPRQSSGLMGRFSQLLSLDSEEPRSQPTEQQLAAHQRTLQTIQTCHVDSIFTESKFLQAD SLLQLARALIWAAGRPQKGNNSPEDEDTAVFCLELLIAITLNNRDRIGLLWQGVYEHIANIVQSTVMPCALVEKAVFGLLRICQRLLPYKENLADELLRS LNLVLKLDARVADAYCDQITQEVSRLVKANATHIRSQMGWRTITSLLSITARHPEASEAGFDALLFIMTGSAHLLPANYILCIDAARQFSESRVGQSERS VRALDLMAGSVDCLTQWSKEAENPMRDNIGEMWLRLVQGLRKVCLDQREEVRNHALLSLQKCLMGVEEINLPHGLWLQCFDMVIFTMLDDLLEIAQGHSQ KDYRNMEGTLIVALKLLSKVFLQLLDELAELTTFCKLWLGVLTRMEKYMKVKIRSRKSDKLQESVPELLKNILLVMKSKGVLVQRTALGGDSLWELTWLH MNNIAPSLQSEVFAGHELEQSRQVKSGSDETGDSPAVGSDSAGTGG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G13980		VAN7, EMB30, GN	VASCULAR NETWORK 7, GNOM, EMBR...		Lus10026627 [exp]	0	1
AT4G21700			Protein of unknown function (D...		Lus10005493 [exp]	1.4	0.9456
AT1G62020			Coatomer, alpha subunit (.1)		Lus10011454 [exp]	3.2	0.9451
AT1G67680			SRP72 RNA-binding domain (.1)		Lus10006439 [exp]	3.7	0.9137
AT1G13980		VAN7, EMB30, GN	VASCULAR NETWORK 7, GNOM, EMBR...		Lus10037140 [exp]	4.9	0.9253
AT1G43690			ubiquitin interaction motif-co...		Lus10024546 [exp]	5.5	0.9069
AT5G43670			Sec23/Sec24 protein transport ...		Lus10022219 [exp]	5.5	0.8961
AT1G05520			Sec23/Sec24 protein transport ...		Lus10021964 [exp]	5.5	0.9153
AT1G13980		VAN7, EMB30, GN	VASCULAR NETWORK 7, GNOM, EMBR...		Lus10036789 [exp]	5.5	0.9354
AT1G62020			Coatomer, alpha subunit (.1)		Lus10035883 [exp]	8.1	0.9226
AT2G32450			Calcium-binding tetratricopept...		Lus10033182 [exp]	8.5	0.8995

Compare expression of checked genes

Lus10026627 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.