Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38830 509 / 2e-172 CRK26 cysteine-rich RLK (RECEPTOR-like protein kinase) 26 (.1) AT4G05200 509 / 3e-172 CRK25 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) AT4G21410 504 / 2e-170 CRK29 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) AT4G23280 503 / 4e-170 CRK20 cysteine-rich RLK (RECEPTOR-like protein kinase) 20 (.1) AT4G23270 491 / 1e-165 CRK19 cysteine-rich RLK (RECEPTOR-like protein kinase) 19 (.1) AT3G45860 491 / 2e-165 CRK4 cysteine-rich RLK (RECEPTOR-like protein kinase) 4 (.1) AT4G23140 489 / 2e-164 RLK5, CRK6 cysteine-rich RLK (RECEPTOR-like protein kinase) 6 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 6 (.2) AT4G23160 492 / 5e-159 CRK8 cysteine-rich RLK (RECEPTOR-like protein kinase) 8 (.1) AT4G23130 472 / 3e-158 RLK6, CRK5 RECEPTOR-LIKE PROTEIN KINASE 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.2) AT4G00970 470 / 2e-157 CRK41 cysteine-rich RLK (RECEPTOR-like protein kinase) 41 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018382 [exp] 764 / 0 AT4G21410 605 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Lus10018379 [exp] 763 / 0 AT4G23180 566 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Lus10007632 [exp] 732 / 0 AT4G05200 624 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10007633 [exp] 630 / 0 AT4G05200 566 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10007634 [exp] 577 / 0 AT4G23160 417 / 1e-137 cysteine-rich RLK (RECEPTOR-like protein kinase) 8 (.1) Lus10007635 [exp] 466 / 1e-152 AT4G21410 385 / 6e-122 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Lus10018380 [exp] 421 / 2e-141 AT4G05200 324 / 2e-104 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10015091 [exp] 448 / 8e-141 AT5G54650 556 / 1e-178 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Lus10031582 [exp] 405 / 2e-132 AT4G05200 436 / 6e-145 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G026350 [exp] 647 / 0 AT4G21410 610 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.011G029700 [exp] 607 / 0 AT4G21410 578 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.011G030000 [exp] 607 / 0 AT4G21410 566 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.011G028800 [exp] 607 / 0 AT4G21410 573 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.011G029000 [exp] 598 / 0 AT4G21410 537 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.011G028600 [exp] 555 / 0 AT4G21410 554 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.011G028400 [exp] 546 / 0 AT4G05200 709 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Potri.004G025200 [exp] 546 / 0 AT4G23180 665 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G026100 [exp] 541 / 0 AT4G23180 662 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.011G030212 [exp] 533 / 0 AT4G21410 537 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0016 [flax] [poplar] PF01657 [flax] [poplar] Stress-antifung Salt stress response/antifungal
Representative CDS sequence Show only first row Show all	>Lus10026629 pacid=23164358 polypeptide=Lus10026629 locus=Lus10026629.g ID=Lus10026629.BGIv1.0 annot-version=v1.0 ATGACGATGATCAAGAGTCCTATCTTTCTTCATCTTCTTCTCCTCTTCATACCACAACTGTTACCTGCCCACGCCCAGTCAGCTCGGTTTCTTTTTCAAA GTTGCTCTGGTGCAGCCGGAAACTACACGGCCGGCAGCATATACGAGCAGAACCTCAAACGCGTCCTCAACTCAATCGCCACCTCCGGCTACCCAATCGT CCCCGGTTTCTACAACTTCTCATCGGGGCGCGGACCCGACCGGGTCAACGGGTTCGGACTCTGCAGAGGTGACACTGGGCTGGACGATTGTCGTGGATGT ATAGCCAACACCACACGTCGGATCCTTGAGGTCTGCCCCAACCAGAAAGAGGCGGTCGGGTATTACGATTTTTGTACGATCCGGTACTCAAACCGGCCCA TCTTCGGCATGTTGGACACTAGCCCCACATACTATATCTGCAACACAGCCAACGTCTCCGACACGACCCGATTCGGCGATGCTCTGGACACCTTGATGAC TCGGCTTAAGCTTGCCGTGACAGCGAAAAGCTCCGGCAGGAAATACGCGCAAGGATTGGAAAGGCAAGGATTCAAGACAATCTATGGACTACTGCAATGC TCTCCGGCTTTGTCGAAACAATTATGCGACGAATGCCTGGAAAGATCCATCAGTCAGATCCCGGTTTTTTGTGGAGGGAAACTAGGAGGGAAAATCATTA GTCCTAGTTGTTATCTGAGGTATGAGACTTATCGGTTTTATTCCGAGGATGATCCGCCTCAGCCTCCGCCTCCGCCTCCACCTCAGCCTCAGCCTCAGCC TCCGCCTCCGCCTCCGGTTGTTCCTGCTCCTTCCTCGTCTTTTGAGGGAAATGGAGGAAGTGATAGGAGAGTATCTATCGTGGTGGTTCCCCTCGTCGGC AGCATTGCCATACTGATCGGCTGTATCTTCTTCTGCTATCGCCGGAAGAAGAAGAAGAGGTCAAAGATCAGAATGCAGATGTCACATCAAAATGACACGA CTGACGAAATAATCAACGACGGAGCGTTGCAGTTTGATTTCGAAACGATTAGGGCCGCAACCAACGATTTTGCTCGTGAAAACAAACTTGGACAAGGCGG ATTTGGAGCCGTTTACAAGGGAACTCTGTTGTGGAATGGGCAAGACATAGCCGTGAAGAGGCTGGCTAAAGATTCAGGGCAAGGAGACTTGGAATTCAAG AATGAAGTAAACTTGGTGGCCAAGCTTCAGCATAGAAACCTAGTGAGGCTTCTTGGTTACTGCTTGGAAGGGACCGAGAGGCTTCTCGTCTACGAGTTTG TGCCCAACACCAGTCTCAATCATTTCCTTTTCAGGAAGGGACGAGATTCAGCCGGGAGAACACATTTGGACTGGGAGAGACGGTCCAAGATCATTCGAGG CATTGCTCGAGGACTTCTTTACCTTCACGAGGACTCTAGGCTTCGGATCATCCATCGCGATTTGAAAACCAGCAACATTATATTGGATTCGGAGATGAAC CCTAAGATTGCGGATTTTGGCTTGGCTCGGTTGTTCCATATGGACGAAACCGAGGGCAGTACCAACAGAATTGTCGGAACCTATGGTTACATGGCTTCAG AGTATGCAATGCATGGAGAATTTTCAGTGAAATCAGACGTGTTTAGTTTCGGAGTATTACTATTGGAGATTGCATGGAAAAACTGGAAAAGTGGGGCGTA TTCAAATGTTATAGATCCCTCGTTGGGGAGTGCTTCGGGGAACGAAATAGCACGATGCATTCATATCGGATTGTTATGCGTGCAAGAGAATGCGAATGAC AGGCCGACCATGGCTACCGTTGCCCTAATGTTGACGAGCAATTCGCTAAGTTTGCAGGTTCCGATGAAGCCAGCGTTCTTCTTGCACACCGGGGTCGGCG ATGAATCTCGTGCCGGAGGAACAAATCATGAGGTGTTTGCTGAGAGCAGTGACAAATCTGGTGGTCAATCACTAGTTGGGTCGGTTAACGGAGCTTCCCT TACTGAATTATATCCTAGTGGCTCTGAGTTCCCTTACCTCATCTTTCCCCTTGATAAGGAGTCCAAAACGACTGGCCGTCTCTTCCCGGACCCACCGCCG CCACTTCACTAG
AA sequence Show only first row Show all	>Lus10026629 pacid=23164358 polypeptide=Lus10026629 locus=Lus10026629.g ID=Lus10026629.BGIv1.0 annot-version=v1.0 MTMIKSPIFLHLLLLFIPQLLPAHAQSARFLFQSCSGAAGNYTAGSIYEQNLKRVLNSIATSGYPIVPGFYNFSSGRGPDRVNGFGLCRGDTGLDDCRGC IANTTRRILEVCPNQKEAVGYYDFCTIRYSNRPIFGMLDTSPTYYICNTANVSDTTRFGDALDTLMTRLKLAVTAKSSGRKYAQGLERQGFKTIYGLLQC SPALSKQLCDECLERSISQIPVFCGGKLGGKIISPSCYLRYETYRFYSEDDPPQPPPPPPPQPQPQPPPPPPVVPAPSSSFEGNGGSDRRVSIVVVPLVG SIAILIGCIFFCYRRKKKKRSKIRMQMSHQNDTTDEIINDGALQFDFETIRAATNDFARENKLGQGGFGAVYKGTLLWNGQDIAVKRLAKDSGQGDLEFK NEVNLVAKLQHRNLVRLLGYCLEGTERLLVYEFVPNTSLNHFLFRKGRDSAGRTHLDWERRSKIIRGIARGLLYLHEDSRLRIIHRDLKTSNIILDSEMN PKIADFGLARLFHMDETEGSTNRIVGTYGYMASEYAMHGEFSVKSDVFSFGVLLLEIAWKNWKSGAYSNVIDPSLGSASGNEIARCIHIGLLCVQENAND RPTMATVALMLTSNSLSLQVPMKPAFFLHTGVGDESRAGGTNHEVFAESSDKSGGQSLVGSVNGASLTELYPSGSEFPYLIFPLDKESKTTGRLFPDPPP PLH

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Lus10026629 [exp]	0	1
AT2G36430			Plant protein of unknown funct...		Lus10027719 [exp]	1.0	0.8936
AT3G19970			alpha/beta-Hydrolases superfam...		Lus10010171 [exp]	3.2	0.8841
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10022415 [exp]	8.6	0.8191
AT3G51550		FER	FERONIA, Malectin/receptor-lik...		Lus10029945 [exp]	11.7	0.8506
AT2G17040	NAC	ANAC036	NAC domain containing protein ...		Lus10022636 [exp]	14.0	0.8589
AT4G08850			Leucine-rich repeat receptor-l...		Lus10005016 [exp]	14.7	0.8572
AT2G46150			Late embryogenesis abundant (L...		Lus10017531 [exp]	16.7	0.8246
AT4G27290			S-locus lectin protein kinase ...		Lus10016862 [exp]	17.6	0.8732
AT5G10770			Eukaryotic aspartyl protease f...		Lus10000265 [exp]	20.0	0.8350
AT3G54700		PHT1;7	phosphate transporter 1;7 (.1)		Lus10016635 [exp]	20.5	0.8404

Compare expression of checked genes

Lus10026629 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.