Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G28120 408 / 4e-144 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030429 [exp] 553 / 0 AT1G28120 416 / 3e-147 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G162600 [exp] 436 / 2e-155 AT1G28120 436 / 2e-155 unknown protein Potri.001G067400 [exp] 424 / 9e-151 AT1G28120 431 / 1e-153 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF10275 [flax] [poplar] Peptidase_C65 Peptidase C65 Otubain
Representative CDS sequence Show only first row Show all	>Lus10026630 pacid=23164230 polypeptide=Lus10026630 locus=Lus10026630.g ID=Lus10026630.BGIv1.0 annot-version=v1.0 ATGCAGAACGACAACCAGCTGGACGATGTCTCACTGCAGTCCTCATCCGCTGCGGAGAACTCCTGGTCCAACGTAGCCGCCTCCGCCGCCGACGAAGACA TCATGCAACAGCACTCCGCCATTCGAGAAGCTGAAGCCGACAAGATGCCTTTCGTCGGCGATAGGGAGCCCCTTTCAGCTTTAGCCGCCGAGTACCAATC CGGCAACGTTATACTACAGCAGAAGATACAGATTCTCTCCGATCGGTACAACGCCATCAGGAGAACACGTGGAGATGGCAATTGCTTCTTCCGTAGCTTC ATGTTTGCCTACCTTGAACATATTCTTCAAAGCCAGGATCTCAAAGAAGCTGATCGTGTGAAAGTGAACGTTGAAGAATGCAGGAAGACGCTTCAGTCTT TGGGATATGCTGATTTCACCTTCGAGGACTTCTTTGCGCTGTTCGTTGAGCAAGTGGACAGTGTTCTTGAAGGAAATGACGATTCAATAAGCCATGATGA GCTTGTAACCAGAAGCAGAGATCAGTCTGTATCAGATTACATTGTCATGTTCTTTAGGTTTCTAACCTCTGGCGAGATAAGAAAGCGCTCTGCATTCTTC GAACCGTTTATCTTCGGTTTAACCAATGCCACAGTAGAGCAGTTTTGCAAGTCATCAGTGGAGCCTATGGGTGAAGAGAGCGATCACGTCCACATCACCG CGCTATCGGACGCCCTAGGAGTACCGATTCGAGTTGTGTACCTTGACCGCAGCTCCGATGAAAACAGTGGAGTTGCTGTGAACCACCATGATTTCATACC TGCTCCTGCAGAAGCTGCTACTGATGATACCATTACTAAGACTGCAGCAGAGCCCTTCATCACTCTGCTCTACCGCCCCGGTCACTACGACATCCTCTAC CCAGAGTGA
AA sequence Show only first row Show all	>Lus10026630 pacid=23164230 polypeptide=Lus10026630 locus=Lus10026630.g ID=Lus10026630.BGIv1.0 annot-version=v1.0 MQNDNQLDDVSLQSSSAAENSWSNVAASAADEDIMQQHSAIREAEADKMPFVGDREPLSALAAEYQSGNVILQQKIQILSDRYNAIRRTRGDGNCFFRSF MFAYLEHILQSQDLKEADRVKVNVEECRKTLQSLGYADFTFEDFFALFVEQVDSVLEGNDDSISHDELVTRSRDQSVSDYIVMFFRFLTSGEIRKRSAFF EPFIFGLTNATVEQFCKSSVEPMGEESDHVHITALSDALGVPIRVVYLDRSSDENSGVAVNHHDFIPAPAEAATDDTITKTAAEPFITLLYRPGHYDILY PE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G28120			unknown protein		Lus10026630 [exp]	0	1
AT1G71860		ATPTP1, PTP1	protein tyrosine phosphatase 1...		Lus10028712 [exp]	1.0	0.9613
AT2G01140		PDE345	PIGMENT DEFECTIVE 345, Aldolas...		Lus10034619 [exp]	2.0	0.9612
AT4G13870		WRNEXO, ATWRNEX...	Werner syndrome-like exonuclea...		Lus10039164 [exp]	2.6	0.9521
AT3G04500			RNA-binding (RRM/RBD/RNP motif...		Lus10014659 [exp]	2.8	0.9512
AT5G59380		MBD6, ATMBD6	methyl-CPG-binding domain 6 (....		Lus10005460 [exp]	3.0	0.9506
AT3G63010		ATGID1B, GID1B	GA INSENSITIVE DWARF1B, alpha/...		Lus10008188 [exp]	4.2	0.9590
AT1G10630		ATARFA1F	ADP-ribosylation factor A1F (....		Lus10001524 [exp]	4.9	0.9522
AT5G15320			unknown protein		Lus10018064 [exp]	7.1	0.9486
AT4G05390		ATRFNR1	root FNR 1 (.1.2)		Lus10038538 [exp]	8.1	0.9533
AT5G01230			S-adenosyl-L-methionine-depend...		Lus10017186 [exp]	9.8	0.9383

Compare expression of checked genes

Lus10026630 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.