Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G26660 142 / 4e-44 Prefoldin chaperone subunit family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030428 [exp] 263 / 5e-92 AT1G26660 157 / 4e-50 Prefoldin chaperone subunit family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G091400 [exp] 223 / 3e-76 AT1G26660 169 / 1e-54 Prefoldin chaperone subunit family protein (.1.2) Potri.010G163600 [exp] 0 / 1 AT1G26660 0 / 1 Prefoldin chaperone subunit family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0200 [flax] [poplar] Prefoldin PF02996 [flax] [poplar] Prefoldin Prefoldin subunit
Representative CDS sequence Show only first row Show all	>Lus10026631 pacid=23164342 polypeptide=Lus10026631 locus=Lus10026631.g ID=Lus10026631.BGIv1.0 annot-version=v1.0 ATGGACAAGCAACGGCAAGATAAGATTCAGAAGTTCGAGGAATTCGTCGACGGCCGATTGAAGCCTGACCTTGTTAAGGCTATCGGTGAAAGGGATAAGA TATTTGAACAGCAGAAGATATTCTCGGATTTGAAGAGAAACATTGAGAACTTGGAAAAGAACAGCGTTACGAGTCTTAGGACATTGGTGGACATTGGCTC TCAAGTTTACATGCAAGCAGATGTGGCGGATGCACAGCGCATTTTTGTCGACTTTGGGCTCGGATTCCATGTCGAGTTCACTTGGTCAGAAGCTCTGAAC TATATCTCGTTGCGGGAAGAGAAGATTGCCAGGCAAATAGGGGAGTATACTAGGCAGATCGCATCGATCAAGACACAGATCAAGACGGTCATTGAAGGCA TTCGAGAGTTGCTAGAACTTCCAGCAGAGAAGCTTCCACCGCAACGGGTCTTCTAA
AA sequence Show only first row Show all	>Lus10026631 pacid=23164342 polypeptide=Lus10026631 locus=Lus10026631.g ID=Lus10026631.BGIv1.0 annot-version=v1.0 MDKQRQDKIQKFEEFVDGRLKPDLVKAIGERDKIFEQQKIFSDLKRNIENLEKNSVTSLRTLVDIGSQVYMQADVADAQRIFVDFGLGFHVEFTWSEALN YISLREEKIARQIGEYTRQIASIKTQIKTVIEGIRELLELPAEKLPPQRVF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G26660			Prefoldin chaperone subunit fa...		Lus10026631 [exp]	0	1
AT5G46030			unknown protein		Lus10025438 [exp]	1.0	0.9215
AT1G25260			Ribosomal protein L10 family p...		Lus10001072 [exp]	1.4	0.9080
AT4G01590			unknown protein		Lus10006847 [exp]	3.7	0.8210
AT3G58130			N-acetylglucosaminylphosphatid...		Lus10034805 [exp]	3.9	0.8537
AT5G45110		ATNPR3, NPR3	NPR1-like protein 3 (.1)		Lus10036200 [exp]	4.2	0.8735
AT1G60670			Protein of unknown function (D...		Lus10013072 [exp]	4.9	0.8581
AT5G64560		MRS2-2, ATMGT9	magnesium transporter 9 (.1.2)		Lus10041169 [exp]	5.3	0.8362
AT3G29000			Calcium-binding EF-hand family...		Lus10019090 [exp]	5.5	0.8395
					Lus10008388 [exp]	5.7	0.8266
AT5G12320			ankyrin repeat family protein ...		Lus10036033 [exp]	7.9	0.8030

Compare expression of checked genes

Lus10026631 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.