Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69420 468 / 3e-160 DHHC-type zinc finger family protein (.1.2) AT4G15080 275 / 3e-84 DHHC-type zinc finger family protein (.1) AT2G33640 261 / 1e-80 DHHC-type zinc finger family protein (.1) AT3G22180 246 / 2e-73 DHHC-type zinc finger family protein (.1) AT4G01730 166 / 3e-45 DHHC-type zinc finger family protein (.1) AT3G48760 82 / 2e-16 DHHC-type zinc finger family protein (.1) AT3G26935 78 / 4e-15 DHHC-type zinc finger family protein (.1) AT5G04270 76 / 4e-15 DHHC-type zinc finger family protein (.1) AT5G41060 76 / 1e-14 DHHC-type zinc finger family protein (.1.2) AT4G24630 75 / 3e-14 DHHC-type zinc finger family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030426 [exp] 841 / 0 AT1G69420 606 / 0.0 DHHC-type zinc finger family protein (.1.2) Lus10036798 [exp] 580 / 0 AT1G69420 766 / 0.0 DHHC-type zinc finger family protein (.1.2) Lus10037133 [exp] 485 / 2e-168 AT1G69420 684 / 0.0 DHHC-type zinc finger family protein (.1.2) Lus10016036 [exp] 268 / 2e-82 AT2G33640 585 / 0.0 DHHC-type zinc finger family protein (.1) Lus10039043 [exp] 263 / 1e-79 AT4G15080 830 / 0.0 DHHC-type zinc finger family protein (.1) Lus10027339 [exp] 258 / 9e-78 AT4G15080 822 / 0.0 DHHC-type zinc finger family protein (.1) Lus10025157 [exp] 192 / 1e-54 AT2G33640 392 / 2e-130 DHHC-type zinc finger family protein (.1) Lus10038029 [exp] 188 / 2e-53 AT4G01730 515 / 4e-180 DHHC-type zinc finger family protein (.1) Lus10009971 [exp] 124 / 2e-30 AT4G01730 432 / 5e-148 DHHC-type zinc finger family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G091700 [exp] 537 / 0 AT1G69420 626 / 0.0 DHHC-type zinc finger family protein (.1.2) Potri.010G163200 [exp] 528 / 0 AT1G69420 563 / 0.0 DHHC-type zinc finger family protein (.1.2) Potri.002G006900 [exp] 285 / 7e-89 AT2G33640 553 / 0.0 DHHC-type zinc finger family protein (.1) Potri.005G254366 [exp] 234 / 2e-73 AT2G33640 395 / 1e-135 DHHC-type zinc finger family protein (.1) Potri.016G018400 [exp] 246 / 5e-73 AT4G15080 800 / 0.0 DHHC-type zinc finger family protein (.1) Potri.006G020800 [exp] 224 / 4e-65 AT4G15080 786 / 0.0 DHHC-type zinc finger family protein (.1) Potri.014G112000 [exp] 199 / 9e-58 AT4G01730 526 / 0.0 DHHC-type zinc finger family protein (.1) Potri.002G186800 [exp] 193 / 2e-55 AT4G01730 520 / 0.0 DHHC-type zinc finger family protein (.1) Potri.007G077000 [exp] 78 / 1e-15 AT4G24630 446 / 6e-157 DHHC-type zinc finger family protein (.1) Potri.001G070100 [exp] 78 / 3e-15 AT3G26935 435 / 1e-150 DHHC-type zinc finger family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01529 [flax] [poplar] DHHC DHHC palmitoyltransferase
Representative CDS sequence Show only first row Show all	>Lus10026632 pacid=23164227 polypeptide=Lus10026632 locus=Lus10026632.g ID=Lus10026632.BGIv1.0 annot-version=v1.0 ATGAGAAAGCATGGTTGGCAGCTTCCTTACCACCCTCTCCAGGTAGTCGCTGTTGCTGTGTTTCTAGCTCTGGGTTTTGCCTTCTATGTCTTCTTTGCCC CCTTTGTTGGGAAGAAGATGTACCAGTACATTGCAATGGGTATCTACACTCCTCTGATCATGTCGGTTTTCGGCCTATATATCCGGTGTGCAGCTGTTGA TCCTGCAGATCCTGGAGTTTTCAGATCAAAGAAGGACTCGAAATTCGGAACTGAGAGGAAGAACCCTTCTTGCTTATCCTGGACTCTATCCCCTTGTGCT TTAGTATGCAATTCGAGCGATGATGAACGATCTGAGAACACCATCGAAGATGGCATGTTCTATTGTAGCTTGTGTGAAGTTGAGGTGTCCAAGTACAGCA AGCATTGTAGAGTTTGCGATAAATGTGTCGATGGATTCGACCATCACTGCAGGTGGATTAACAATTGTATAGGAAAGAAGAACTACAGAAAGTTCTTCAC CCTCATGGCATCTGCAATCTTACTGCTTATCTTCCAATGGGCAACCGGGATTCTCGTTCTTGTTCGTTGTTTCATCGAGAGGAAGCGATTTGTGGTCGAA ATCTCATCGAAGTTGGGTAGCAGCTTCTCGTTGGTACCATTTATAATGGTGGTGGCAGTATGCACCATTTTGGCAATGCTTGCAACTCTGCCATTAGCTC AGTTGTTCTGCTTCCACATCCTGCTCATTAAAAAGGGAATCAGCACTTATGATTACATAATAGCTTTAAGAGAGCAAGAACAGGATCAGCAGCAAGGAGA ATTTGGTCAGCACAGTCCTCAAATGTCGCAAGTTAGCTCGGTTACAGGTCTAAGCAGTGTCAGTTCCTTTTCTACATTCCACCGGGCTGCCTGGTGTACG CCTCCTCGACTGTTTCTTGAAGATCAGTTTGATGTCATACCTCCCGACACTGGATCCGTGAGTTCGTTTGGAAAGAAGATATCGAAGAGAGAAGAACCGG TCAAGAAGAAGGCTGCTGTAGAGATCAGTCCTTGGACATTAGCAAAATTGAACGCGGAAGAGGTCTCGAAAGCTGCTGCTGAGGCCAGAAAGAAGTCTAG AATCTTGTCGGAAAGAAGGTTCCCAGCTGGCTTGAAGCTGAAGGAAGAGCCTTTAACTGCTGGTGTTCCAGTAACTTCCTCCTCAAGTTTCGGCCCTCTT CAGCTCGAGGCAAGGAGTGCTTTCCAACCAACTGTTGGATCGAGTTCTCCTGAAAGCTGTGTCGTCGTGGATTCCCCTGAGGTTTACGATTCTCGGAGGC TTACATCTAACGAAGTGAATTTCCCGCTCTCGAGGTCTTCTACTAGTGATGGGTATGAAGCATCTGGTGGTGAAGATAGTGATCACAGGGTTGTTCATGC TACTAATAGGATTGTTCAGAGATCAACTGACTGGAGCAACCTTATGTTATTGGCGAGTCAGGACGAAGAAGGATTTCGGAGACTGAAAGCATCAGCATCA AGCTCGAACAGTGGAAAGATATAA
AA sequence Show only first row Show all	>Lus10026632 pacid=23164227 polypeptide=Lus10026632 locus=Lus10026632.g ID=Lus10026632.BGIv1.0 annot-version=v1.0 MRKHGWQLPYHPLQVVAVAVFLALGFAFYVFFAPFVGKKMYQYIAMGIYTPLIMSVFGLYIRCAAVDPADPGVFRSKKDSKFGTERKNPSCLSWTLSPCA LVCNSSDDERSENTIEDGMFYCSLCEVEVSKYSKHCRVCDKCVDGFDHHCRWINNCIGKKNYRKFFTLMASAILLLIFQWATGILVLVRCFIERKRFVVE ISSKLGSSFSLVPFIMVVAVCTILAMLATLPLAQLFCFHILLIKKGISTYDYIIALREQEQDQQQGEFGQHSPQMSQVSSVTGLSSVSSFSTFHRAAWCT PPRLFLEDQFDVIPPDTGSVSSFGKKISKREEPVKKKAAVEISPWTLAKLNAEEVSKAAAEARKKSRILSERRFPAGLKLKEEPLTAGVPVTSSSSFGPL QLEARSAFQPTVGSSSPESCVVVDSPEVYDSRRLTSNEVNFPLSRSSTSDGYEASGGEDSDHRVVHATNRIVQRSTDWSNLMLLASQDEEGFRRLKASAS SSNSGKI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G69420			DHHC-type zinc finger family p...		Lus10026632 [exp]	0	1
AT1G69420			DHHC-type zinc finger family p...		Lus10030426 [exp]	1.0	0.8778
AT5G65980			Auxin efflux carrier family pr...		Lus10035978 [exp]	4.2	0.8239
AT2G17525			Pentatricopeptide repeat (PPR)...		Lus10016688 [exp]	5.5	0.8255
AT3G28420			Putative membrane lipoprotein ...		Lus10039459 [exp]	5.7	0.8306
AT3G17220		ATPMEI2	pectin methylesterase inhibito...		Lus10017346 [exp]	5.8	0.7297
AT1G26810		GALT1	galactosyltransferase1 (.1)		Lus10037171 [exp]	6.7	0.7679
AT1G12330			unknown protein		Lus10004335 [exp]	7.4	0.7785
AT3G28420			Putative membrane lipoprotein ...		Lus10005837 [exp]	7.6	0.8457
AT1G49890		QWRF2	QWRF domain containing 2, Fami...		Lus10014636 [exp]	8.8	0.8343
AT2G34710	HD	ATHB14, PHB-1D,...	PHABULOSA 1D, PHABULOSA, ARABI...		Lus10023357 [exp]	13.5	0.7967

Compare expression of checked genes

Lus10026632 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.