Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13970 497 / 3e-173 Protein of unknown function (DUF1336) (.1) AT3G29180 426 / 3e-145 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2) AT5G39430 407 / 8e-138 Protein of unknown function (DUF1336) (.1) AT1G59650 332 / 6e-109 CW14 Protein of unknown function (DUF1336) (.1) AT1G10410 327 / 6e-107 Protein of unknown function (DUF1336) (.1) AT5G25010 50 / 1e-06 Protein of unknown function (DUF1336) (.1) AT5G24990 42 / 0.0005 Protein of unknown function (DUF1336) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030425 [exp] 899 / 0 AT1G13970 499 / 2e-174 Protein of unknown function (DUF1336) (.1) Lus10037132 [exp] 684 / 0 AT3G29180 470 / 9e-163 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2) Lus10036683 [exp] 317 / 5e-103 AT1G59650 603 / 0.0 Protein of unknown function (DUF1336) (.1) Lus10010740 [exp] 314 / 1e-101 AT1G59650 610 / 0.0 Protein of unknown function (DUF1336) (.1) Lus10039463 [exp] 315 / 2e-101 AT1G59650 478 / 3e-165 Protein of unknown function (DUF1336) (.1) Lus10005831 [exp] 310 / 7e-100 AT1G59650 471 / 1e-162 Protein of unknown function (DUF1336) (.1) Lus10036799 [exp] 265 / 3e-85 AT1G13970 181 / 7e-53 Protein of unknown function (DUF1336) (.1) Lus10000174 [exp] 258 / 6e-85 AT1G13970 224 / 2e-72 Protein of unknown function (DUF1336) (.1) Lus10040015 [exp] 56 / 6e-08 AT5G35180 1034 / 0.0 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2), Protein of unknown function (DUF1336) (.3), Protein of unknown function (DUF1336) (.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G163100 [exp] 554 / 0 AT1G13970 543 / 0.0 Protein of unknown function (DUF1336) (.1) Potri.017G088000 [exp] 423 / 8e-144 AT3G29180 615 / 0.0 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2) Potri.008G190500 [exp] 335 / 2e-109 AT1G59650 579 / 0.0 Protein of unknown function (DUF1336) (.1) Potri.017G074800 [exp] 333 / 2e-109 AT1G59650 472 / 6e-164 Protein of unknown function (DUF1336) (.1) Potri.010G040100 [exp] 324 / 5e-105 AT1G59650 598 / 0.0 Protein of unknown function (DUF1336) (.1) Potri.008G038800 [exp] 47 / 2e-05 AT3G54800 922 / 0.0 Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.1), Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.2) Potri.018G113100 [exp] 46 / 6e-05 AT5G35180 1028 / 0.0 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2), Protein of unknown function (DUF1336) (.3), Protein of unknown function (DUF1336) (.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07059 [flax] [poplar] DUF1336 Protein of unknown function (DUF1336)
Representative CDS sequence Show only first row Show all	>Lus10026633 pacid=23164380 polypeptide=Lus10026633 locus=Lus10026633.g ID=Lus10026633.BGIv1.0 annot-version=v1.0 ATGGGAGGATGTGTATCTACACAGGCTCATGGAAGCAGGGTGGGGCCAGAAGGAGGGAAGAGCAGGCGGCGGCACAGATTTTCGAGGCGTTCGGCTAAGA TCGTCAATGCAATGGCTGACGTGCCAGAGGCCATGAAAAGGCTGAGTAGTGCCGGAGGTGACTTCTCGATGAGTACTGAGTTTGCCCGTGTCGATTTCGA AAACGGCTCTGCTACCACTTGTAGGAGGTCAGAAGTCTCCAACAAGAACTTCCATCTAACTCAGGTCCAATGGAACCAATGCCACATTGATCAAAATGGA ATAAATCAAGAGGAAGTGTGGTTTGATTCGGTTAGTTTTATAGAGTCTGATTCGGATGACGACTTCATTAGCATGCACGAGGGATTTCCGGGCTTTAGCA ACACAATGATGCCAAATGCACAACTTCTCGAGGCCGCTGCTTCAAACTTTGGGGACAAGTGCAAGTACGAAGGGTTTTACGAGAGCTACACGAAGATAGA CGAAGTACTAGAGGGCAAGGAGAAAAGGAAGTCGACCGTCATTAGGGTCGTAAAGAGGAAATCCGTCGACGGAAAGGCCCTCGCTAAAGGAGGTCCAGGG GCCGAGAAGATGTGTTACAGGCCGAAGGCAGGGAACTTGATCCCAAGAGAAGAGAAGCCGATTGTTGGGACATGGTCCGATGTTTCTCCTTCGGTTTTCA AGCTTCGCGGAGATAACTATTTTAGGCAAGTTCCATTTCGATTGCATCTTATAGCCAACAAGCAGAAACAGGCAGCTCCAGAGATAAGCCCATATGTACC CTTTGGAGTTGACCTCTTCATGTGTCCAAGGAAAGTCAGCCACATTGCTCAACACCTTGACCTTCCTCAGGTTCAGCCTCACGACAAGGTTCCATCACTC TTGATCGTCAACATTCAGATTCCTACGTACCCTGTTGCGATGTTCAATGGTGACTGCGATGGAGAGGGCATGAGCCTTGTTCTCTACTTCAAGCTGTCTG AAAACTACGACACTGAAGTCTCTCCTCATTTCCAGGAGACCCTCAAGAAATTTGTGGATGATGAAATGGAGAAAGTCAAGGGCTTTGCCAAGGACTCCAC AGTTCCATTCAGAGAAAGGCTGAAGCTTTTGGTTGGACTCGTGAATCCTGAGGATCTGAACTTGAGCTCCACAGAGAAGAAGTTGATCCATGCTTACAAC GAAAAGCCCGTCCTTTCTCGCCCTCAACACCAGTTCTTCAGCGGCCCTAATTACTTGGAAATCGACCTCGACATCCACCGGTTCAGCTACATTTCAAGGA AGGGCCTCGAGTCGTTCAGGGACAGGCTAAAGCTTGGCATTGCAAACGTTGGCTTAACCATCCAGGCACAGAAGCCAGAAGAGCTGCCGGAGCAAGTGCT GTGCTGTTTGAGGCTGAACAAGATCGATTTCGTGAACCGCGGCCAGATCCCTACCTTGGTAACCAAGGAAGATTGA
AA sequence Show only first row Show all	>Lus10026633 pacid=23164380 polypeptide=Lus10026633 locus=Lus10026633.g ID=Lus10026633.BGIv1.0 annot-version=v1.0 MGGCVSTQAHGSRVGPEGGKSRRRHRFSRRSAKIVNAMADVPEAMKRLSSAGGDFSMSTEFARVDFENGSATTCRRSEVSNKNFHLTQVQWNQCHIDQNG INQEEVWFDSVSFIESDSDDDFISMHEGFPGFSNTMMPNAQLLEAAASNFGDKCKYEGFYESYTKIDEVLEGKEKRKSTVIRVVKRKSVDGKALAKGGPG AEKMCYRPKAGNLIPREEKPIVGTWSDVSPSVFKLRGDNYFRQVPFRLHLIANKQKQAAPEISPYVPFGVDLFMCPRKVSHIAQHLDLPQVQPHDKVPSL LIVNIQIPTYPVAMFNGDCDGEGMSLVLYFKLSENYDTEVSPHFQETLKKFVDDEMEKVKGFAKDSTVPFRERLKLLVGLVNPEDLNLSSTEKKLIHAYN EKPVLSRPQHQFFSGPNYLEIDLDIHRFSYISRKGLESFRDRLKLGIANVGLTIQAQKPEELPEQVLCCLRLNKIDFVNRGQIPTLVTKED

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G13970			Protein of unknown function (D...		Lus10026633 [exp]	0	1
AT5G50850		MAB1	MACCI-BOU, Transketolase famil...		Lus10032549 [exp]	5.2	0.8461
AT5G34940		ATGUS3	glucuronidase 3 (.1.2.3)		Lus10008823 [exp]	5.3	0.8530
AT3G59480			pfkB-like carbohydrate kinase ...		Lus10020346 [exp]	5.5	0.8492
AT5G62890			Xanthine/uracil permease famil...		Lus10043460 [exp]	5.7	0.8119
AT3G06350		EMB3004, MEE32	MATERNAL EFFECT EMBRYO ARREST ...		Lus10033981 [exp]	6.3	0.8413
AT1G49420			Heavy metal transport/detoxifi...		Lus10038786 [exp]	8.1	0.8027
AT4G27270			Quinone reductase family prote...		Lus10007612 [exp]	12.8	0.8434
AT5G65660			hydroxyproline-rich glycoprote...		Lus10039633 [exp]	14.0	0.7719
AT2G32510		MAPKKK17	mitogen-activated protein kina...		Lus10030042 [exp]	15.5	0.7891
AT2G36290			alpha/beta-Hydrolases superfam...		Lus10018549 [exp]	16.2	0.7664

Compare expression of checked genes

Lus10026633 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.