Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G03340 364 / 9e-122 WRKY WRKY3 WRKY DNA-binding protein 3 (.1) AT1G13960 359 / 9e-120 WRKY WRKY4 WRKY DNA-binding protein 4 (.1.2) AT3G01080 262 / 2e-83 WRKY ATWRKY58, WRKY58 WRKY DNA-binding protein 58 (.1) AT2G38470 248 / 1e-76 WRKY ATWRKY33, WRKY33 WRKY DNA-binding protein 33 (.1) AT4G26640 246 / 2e-76 WRKY ATWRKY20, WRKY20 WRKY family transcription factor family protein (.1.2) AT5G07100 228 / 1e-72 WRKY WRKY26 WRKY DNA-binding protein 26 (.1.2) AT4G26440 236 / 1e-71 WRKY ATWRKY34, MSP3, WRKY34 MICROSPORE-SPECIFIC PROMOTER 3, WRKY DNA-binding protein 34 (.1) AT2G30250 216 / 8e-66 WRKY ATWRKY25, WRKY25 WRKY DNA-binding protein 25 (.1) AT2G04880 205 / 5e-61 WRKY ATWRKY1, ZAP1 zinc-dependent activator protein-1 (.1.2) AT4G12020 188 / 7e-52 WRKY MEKK4, MAPKKK11, ATWRKY19, WRKY19 MAPK/ERK KINASE KINASE 4, MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 11, protein kinase family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030424 [exp] 693 / 0 AT1G13960 421 / 7e-144 WRKY DNA-binding protein 4 (.1.2) Lus10037131 [exp] 439 / 3e-152 AT2G03340 414 / 1e-141 WRKY DNA-binding protein 3 (.1) Lus10036800 [exp] 399 / 9e-137 AT2G03340 405 / 4e-138 WRKY DNA-binding protein 3 (.1) Lus10000173 [exp] 363 / 3e-124 AT2G03340 366 / 2e-124 WRKY DNA-binding protein 3 (.1) Lus10015377 [exp] 324 / 8e-106 AT2G03340 417 / 3e-141 WRKY DNA-binding protein 3 (.1) Lus10033000 [exp] 271 / 2e-85 AT2G03340 367 / 1e-121 WRKY DNA-binding protein 3 (.1) Lus10012215 [exp] 259 / 1e-80 AT2G38470 393 / 2e-131 WRKY DNA-binding protein 33 (.1) Lus10001265 [exp] 255 / 2e-79 AT2G38470 394 / 2e-132 WRKY DNA-binding protein 33 (.1) Lus10027139 [exp] 256 / 4e-78 AT5G56270 528 / 1e-179 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G163000 [exp] 402 / 1e-136 AT1G13960 431 / 5e-147 WRKY DNA-binding protein 4 (.1.2) Potri.008G091900 [exp] 372 / 2e-125 AT2G03340 407 / 7e-138 WRKY DNA-binding protein 3 (.1) Potri.004G120800 [exp] 309 / 5e-100 AT2G03340 358 / 5e-118 WRKY DNA-binding protein 3 (.1) Potri.016G128300 [exp] 259 / 1e-80 AT2G38470 377 / 8e-125 WRKY DNA-binding protein 33 (.1) Potri.011G169300 [exp] 258 / 9e-79 AT5G56270 588 / 0.0 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1) Potri.013G153400 [exp] 255 / 9e-79 AT2G38470 329 / 5e-106 WRKY DNA-binding protein 33 (.1) Potri.017G088300 [exp] 249 / 1e-76 AT1G13960 286 / 9e-90 WRKY DNA-binding protein 4 (.1.2) Potri.001G361600 [exp] 245 / 4e-75 AT4G26640 540 / 0.0 WRKY family transcription factor family protein (.1.2) Potri.019G123500 [exp] 244 / 3e-74 AT2G38470 299 / 3e-94 WRKY DNA-binding protein 33 (.1) Potri.011G087900 [exp] 241 / 1e-73 AT4G26640 555 / 0.0 WRKY family transcription factor family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0274 [flax] [poplar] WRKY-GCM1 PF03106 [flax] [poplar] WRKY WRKY DNA -binding domain
Representative CDS sequence Show only first row Show all	>Lus10026634 pacid=23164292 polypeptide=Lus10026634 locus=Lus10026634.g ID=Lus10026634.BGIv1.0 annot-version=v1.0 ATGGCCGAAAATGAAGGCCAAGGACCTCCGCCGCGGTCCTCCAGACCCACCAACATCACTCTGCCTCCTCGCTCCTTCGGCGAGATGTTCGCCGCCGCAG GCGGCGGCGGAGGAACGCCCAACGGGTTTGGGTTGAGTCCGGGTCCGATGACTCTGGTTTCCAGGTTCTTCTCTGCTGACGGCGGCGGCGGCGGCGGCGA AGACTTTAAGAACTTTTCCCAGCTTCTCGCCGGAGTCATGTCTCCCGCGGCGGCGACGAATGGTTCTACCAAGGCTGAGGAGGAGAAAGAAGGGTTCAGC AAGGTGTCGAGTTTGGCGGCTGCTCCGACGCCGCCGGCGTCGGCGATGTTCATGGTTCCGGCGGCTCTGCTTGATTCTCCCGGGATGGGATTGTTTTCAC CTCAGGGACCTTATGGAGTGAGCCATCAGCAGGCCTTAGCACAATTCACTTCACAAATGACATCTTCGACACCCGAGCCAATGGTGCAACAACAGCAGAT TGTCCCGGTATCCGAATCTGCAAAGATCGAACCTTTAACAGGATCCTTCATTCCCAACGTCTCGTCGTTTGTCATTGATAAGCCTGCTGACGACGGGTAC AACTGGCGAAAATACGGGCAGAAACAGGTGAAAGGAAGCGAGTTCCCCAGAAGTTACTACAAGTGTACACATCCCAAATGTCCTGTCAAGAAGAAAGTTG AGAGATCCCTTGACGGCCAAGTAACCGAGATTATTTACAAAGGGCAGCATAACCATCCGCCTCCACAGTCTGGTAAGCGTACCGGTCAGGTGAATGTCGA ATCTGGTTCGCAAAGTTCAAATCTTAAGAGGAAAGAGCAGGAGTCTAGTAGTCAAGCTACTGGAGATCACTTGTCTGTCACTAGTGACAGTGATGAAAAC GATGAAGATGAGCCTGATGCCAAAAGGAGAAATGTTGAGGTTAAGGTGACAGAGCCAACAAGTTCATCATCACATAGAACTGTGACAGAACCGCGGATCA TTGTGCAGACTACAAGCGAAGTCGACCTCTTGGACGATGGATACCGATGGCGCAAGTATGGCCAGAAAGTTGTCAAAGGAAATCCTTATCCAAGGAGCTA CTACAAATGCACAACGCAAGGATGCAACGTGAGGAAGCACGTTGAAAGGGCTGCATTGGACTCGAGAGCAGTTATAACAACGTACGAGGGGAAACACTAC CACGATGTCCCAGCTGCGAAACACAGCAGCCACAACATTGCCAGCAGTCTCAACCGGATCGCCAGCAACAACCAGCACCAGCAATCAATAGTGCAGTTGC GGTTGAAAGACGAACAGATGACATAG
AA sequence Show only first row Show all	>Lus10026634 pacid=23164292 polypeptide=Lus10026634 locus=Lus10026634.g ID=Lus10026634.BGIv1.0 annot-version=v1.0 MAENEGQGPPPRSSRPTNITLPPRSFGEMFAAAGGGGGTPNGFGLSPGPMTLVSRFFSADGGGGGGEDFKNFSQLLAGVMSPAAATNGSTKAEEEKEGFS KVSSLAAAPTPPASAMFMVPAALLDSPGMGLFSPQGPYGVSHQQALAQFTSQMTSSTPEPMVQQQQIVPVSESAKIEPLTGSFIPNVSSFVIDKPADDGY NWRKYGQKQVKGSEFPRSYYKCTHPKCPVKKKVERSLDGQVTEIIYKGQHNHPPPQSGKRTGQVNVESGSQSSNLKRKEQESSSQATGDHLSVTSDSDEN DEDEPDAKRRNVEVKVTEPTSSSSHRTVTEPRIIVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTQGCNVRKHVERAALDSRAVITTYEGKHY HDVPAAKHSSHNIASSLNRIASNNQHQQSIVQLRLKDEQMT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G13960	WRKY	WRKY4	WRKY DNA-binding protein 4 (.1...		Lus10026634 [exp]	0	1
AT5G25220	HD	KNAT3	KNOTTED1-like homeobox gene 3 ...		Lus10006291 [exp]	2.0	0.9230
AT4G32180		ATPANK2	pantothenate kinase 2 (.1.2.3)		Lus10029146 [exp]	2.2	0.9404
AT1G13960	WRKY	WRKY4	WRKY DNA-binding protein 4 (.1...		Lus10030424 [exp]	2.8	0.9021
AT4G16760		ATACX1, ACX1	acyl-CoA oxidase 1 (.1.2)		Lus10040183 [exp]	9.2	0.9110
AT5G06060			NAD(P)-binding Rossmann-fold s...		Lus10016494 [exp]	10.5	0.9009
AT4G35840			RING/U-box superfamily protein...		Lus10028406 [exp]	11.5	0.8654
AT4G35090		CAT2	catalase 2 (.1.2)		Lus10013225 [exp]	13.3	0.8855
AT4G35750			SEC14 cytosolic factor family ...		Lus10005640 [exp]	14.1	0.8440
AT2G24100		ASG1	ALTERED SEED GERMINATION 1, un...		Lus10024097 [exp]	15.6	0.9020
AT2G39840		TOPP4	type one serine/threonine prot...		Lus10004692 [exp]	16.5	0.8881

Compare expression of checked genes

Lus10026634 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.