Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46520 348 / 1e-107 cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter, putative (.1) AT1G01950 61 / 3e-09 AtKINUb, ARK2 Arabidopsis thaliana KINESIN Ungrouped clade, gene B, armadillo repeat kinesin 2 (.1.2.3) AT1G12430 58 / 2e-08 AtKINUa, ARK3, PAK phosphatidic acid kinase, Arabidopsis thaliana KINESIN Ungrouped clade, gene A, armadillo repeat kinesin 3 (.1.2) AT3G54870 47 / 4e-05 AtKINUc, CAE1, ARK1, MRH2 MORPHOGENESIS OF ROOT HAIR 2, CA-ROP2 ENHANCER 1, Arabidopsis thaliana KINESIN Ungrouped clade, gene A, ARMADILLO REPEAT-CONTAINING KINESIN 1, Armadillo/beta-catenin repeat family protein / kinesin motor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030423 [exp] 591 / 0 AT2G46520 398 / 6e-129 cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter, putative (.1) Lus10005968 [exp] 434 / 6e-143 AT2G46520 1073 / 0.0 cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter, putative (.1) Lus10030241 [exp] 432 / 3e-139 AT2G46520 1438 / 0.0 cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter, putative (.1) Lus10030434 [exp] 345 / 2e-111 AT2G46520 449 / 6e-149 cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter, putative (.1) Lus10030433 [exp] 309 / 8e-100 AT2G46520 212 / 5e-62 cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter, putative (.1) Lus10007014 [exp] 72 / 1e-12 AT1G12430 1304 / 0.0 phosphatidic acid kinase, Arabidopsis thaliana KINESIN Ungrouped clade, gene A, armadillo repeat kinesin 3 (.1.2) Lus10006670 [exp] 72 / 1e-12 AT1G12430 1143 / 0.0 phosphatidic acid kinase, Arabidopsis thaliana KINESIN Ungrouped clade, gene A, armadillo repeat kinesin 3 (.1.2) Lus10038007 [exp] 64 / 3e-10 AT1G01950 1272 / 0.0 Arabidopsis thaliana KINESIN Ungrouped clade, gene B, armadillo repeat kinesin 2 (.1.2.3) Lus10009241 [exp] 63 / 5e-10 AT1G01950 1353 / 0.0 Arabidopsis thaliana KINESIN Ungrouped clade, gene B, armadillo repeat kinesin 2 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G100000 [exp] 353 / 2e-109 AT2G46520 1464 / 0.0 cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter, putative (.1) Potri.002G172700 [exp] 345 / 3e-106 AT2G46520 1421 / 0.0 cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter, putative (.1) Potri.003G117000 [exp] 59 / 1e-08 AT1G12430 1348 / 0.0 phosphatidic acid kinase, Arabidopsis thaliana KINESIN Ungrouped clade, gene A, armadillo repeat kinesin 3 (.1.2) Potri.014G070900 [exp] 57 / 3e-08 AT1G01950 1359 / 0.0 Arabidopsis thaliana KINESIN Ungrouped clade, gene B, armadillo repeat kinesin 2 (.1.2.3) Potri.001G115100 [exp] 57 / 4e-08 AT1G12430 1325 / 0.0 phosphatidic acid kinase, Arabidopsis thaliana KINESIN Ungrouped clade, gene A, armadillo repeat kinesin 3 (.1.2) Potri.002G149400 [exp] 56 / 7e-08 AT1G01950 1360 / 0.0 Arabidopsis thaliana KINESIN Ungrouped clade, gene B, armadillo repeat kinesin 2 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF08506 [flax] [poplar] Cse1 Cse1 CL0020 [flax] [poplar] TPR PF03378 [flax] [poplar] CAS_CSE1 CAS/CSE protein, C-terminus
Representative CDS sequence Show only first row Show all	>Lus10026635 pacid=23164426 polypeptide=Lus10026635 locus=Lus10026635.g ID=Lus10026635.BGIv1.0 annot-version=v1.0 ATGGAGGCTATACAAGATCTTCTTGATCCACATAATGACAATATTTCTATTGTGGGAGACCACAAAACTGGAGATGTTTCATTGCCTGGAGCTACTCAAG TTGAAGGAATGACGCTGATTGGTCTAACACTTCTACGATCTTTTACTCTGTCTTTGTTTCAGGAATTGCCTGATTTGTTTGAGGATGATATGAGGGAATG GCTGACAGAGTTTAAAAAGTACTTGACCTCAAGTTATCCTGCAATGGAGAGTAGTGGTCCTGAACTTGCTGTTGCAGATGATCTTAGAGCTGCTGTTTGT GAGAATATTAGTCTTTACATGGAAGAGTTCGAACCCTACTTGAATGCTGACTTGAATGATGTTGCGCTTGCTGTTGTTCGGAGTCTGTTGGTCAATGTAT CATCTCAGAATGATGCTAGCCGTGATAGGTTGGCTGTTTCTGCTATTAAATTCTTAACTGCAGTGAGTAAGAGTGTGCTCCACAGTTTGTTTAGAGAGGA TGGTATATTACTGCAAATATGTCAGAATTTTGTGATTCCCAATGTTCGTTTGAGAGACGACGATGAGGAGCTGTTTGAGATGAATTACATGGAGTATATC AGGAGGGATATGGAGGAGGAGTTGGAAGGTAGTACGAGAAGGAGGAGGGTTGTTTGTAAGTTGCTCAAGGGGATTGCTGCAAATTATAAGCATCAAGATA AGGAATGTGCAATACATCTAGTGGTGTCCCTTGCCAGGAAGAAATCCCTAGGAGGAGGCGTAGTTGATGTTGAAAGCTTCTTTGCTTCAGTCATAGTGCC TGAGTTAGAAAGCCAGGATGATGATGTTAACTCATGTCCGATGCTCAAAGCTGGTGCTCTAAGGTTCTGCACACTGTTGAGAAATCAGATACCGAAGCAG CATCTTGCTGCAATTCAACACCATCTTCCTCCGTTCCTCATAGCAGATTTGCAAAACCCCCAAAATCCTGGTTTCAACTACTATCTGTTTGAGTCGGTAG CTCTTCTTGTGAAGCGAGCATGTGAGAGGGATAGAGCTCTGGTACCAACTTTTGAAGAAATATTATTCCCGAGTCTTGAGTTGATCTTGGAGGATGATGT GACTGAATTCTTGCCGTATGCATTTCAGCTCTTGTCCCAACTGGTTGACTTGAATCAGCAGCCGCCTATTCCTCCTATTTACATGCAGATTTTCAATAAG CTCCTCGTCTCTCCTCCTGAATCATGTTGGAATACAAGGTCAAGTGTTCGTGAACTTGTACGTCTACTGCAGGCCTTGATTCAGAAAGCACCACATGAGC TCCTCCTCGACAAGGTGGAAGGTATATTCAACCGGCTAATATCATCTTCTAGCTCCTCCGAGGAACAGGGGTTCCATCTTCTCGACACTGTTATTGAGAA TATCGAATTTGATGTCATCTCCCCCTACATGGTTCACATCTGGGCAGCCATATTCAGCTGTCTCAAGGAGAAAGAAGAAGCAGAGTTATCACAAGTGCTT ATTATAGATAAGTCTCTTGTGATTTTCATGTCACGGTATCTGACCAAGCATGGTCCTGGAAACCTCATTGATTCAGTGAATACTTCAGGTCAAGGGAACA TCTTCATGACGATCCTGGACAAATTGTGGATACCGAATCTCTGGATGATTACCCGAGAGATTGAGGTTAAGTTAGCTGCTGTTGCATCGTGCAGACTTAT CTGCGAATCTCCTCTTCTTTTGGATCCAGCAGCTGCTAGTCACTGGGGGAATATGCGGGACAGCATTGTCACTCTCCTCTCAAGAAAGCCAGTTGAAGTT AATTATAGACTGGAGTTTAACATTCTGTTAAAAAAGAAGAGACTGCTGCTTAACATGGAGCCTGAAATTTATACTGAACCGTTCGTCCATCTTTACAGTG CTTGGAAGGAGGAGGAAGATGACCTGTTGAAAGACGTTAGAGATCCAAAGCAGTTCCTAGTGACTTGTTTGTCAAGGCTCACTGCATATTCTCCTGGGAG GTTCCAACAAATAATCAATCACAATCTCGATTCAGATAATCAAACAGCACTGCTCCAGCTTTGA
AA sequence Show only first row Show all	>Lus10026635 pacid=23164426 polypeptide=Lus10026635 locus=Lus10026635.g ID=Lus10026635.BGIv1.0 annot-version=v1.0 MEAIQDLLDPHNDNISIVGDHKTGDVSLPGATQVEGMTLIGLTLLRSFTLSLFQELPDLFEDDMREWLTEFKKYLTSSYPAMESSGPELAVADDLRAAVC ENISLYMEEFEPYLNADLNDVALAVVRSLLVNVSSQNDASRDRLAVSAIKFLTAVSKSVLHSLFREDGILLQICQNFVIPNVRLRDDDEELFEMNYMEYI RRDMEEELEGSTRRRRVVCKLLKGIAANYKHQDKECAIHLVVSLARKKSLGGGVVDVESFFASVIVPELESQDDDVNSCPMLKAGALRFCTLLRNQIPKQ HLAAIQHHLPPFLIADLQNPQNPGFNYYLFESVALLVKRACERDRALVPTFEEILFPSLELILEDDVTEFLPYAFQLLSQLVDLNQQPPIPPIYMQIFNK LLVSPPESCWNTRSSVRELVRLLQALIQKAPHELLLDKVEGIFNRLISSSSSSEEQGFHLLDTVIENIEFDVISPYMVHIWAAIFSCLKEKEEAELSQVL IIDKSLVIFMSRYLTKHGPGNLIDSVNTSGQGNIFMTILDKLWIPNLWMITREIEVKLAAVASCRLICESPLLLDPAAASHWGNMRDSIVTLLSRKPVEV NYRLEFNILLKKKRLLLNMEPEIYTEPFVHLYSAWKEEEDDLLKDVRDPKQFLVTCLSRLTAYSPGRFQQIINHNLDSDNQTALLQL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G46520			cellular apoptosis susceptibil...		Lus10026635 [exp]	0	1
AT5G67580	MYB	ATTBP3, TRB2, A...	TELOMERE-BINDING PROTEIN 3, TE...		Lus10011546 [exp]	5.7	0.8317
AT3G25585		AAPT2, ATAAPT2	aminoalcoholphosphotransferase...		Lus10034410 [exp]	6.3	0.7959
AT4G30560		ATCNGC9	cyclic nucleotide gated channe...		Lus10022155 [exp]	7.5	0.8242
AT1G24560			unknown protein		Lus10038257 [exp]	11.1	0.8040
AT2G20010			Protein of unknown function (D...		Lus10034947 [exp]	11.8	0.7918
AT3G07810			RNA-binding (RRM/RBD/RNP motif...		Lus10000537 [exp]	13.9	0.7764
AT1G63690		ATSPPL2	SIGNAL PEPTIDE PEPTIDASE-LIKE ...		Lus10024653 [exp]	13.9	0.7970
AT3G19553			Amino acid permease family pro...		Lus10040966 [exp]	15.5	0.7863
AT5G64500			Major facilitator superfamily ...		Lus10011580 [exp]	17.9	0.7586
AT5G53140			Protein phosphatase 2C family ...		Lus10039341 [exp]	22.2	0.7819

Compare expression of checked genes

Lus10026635 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.