Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G26640 405 / 4e-142 Amino acid kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G162900 [exp] 440 / 6e-156 AT1G26640 517 / 0.0 Amino acid kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00696 [flax] [poplar] AA_kinase Amino acid kinase family
Representative CDS sequence Show only first row Show all	>Lus10026636 pacid=23164284 polypeptide=Lus10026636 locus=Lus10026636.g ID=Lus10026636.BGIv1.0 annot-version=v1.0 ATGGAGAAACCAAGCAAAGTCCAGAGTCTCCCCACCATTCGCTGCATCGTCAAACTCGGCGGCGCAGCAATCACTTGCAAGAACGAGCTGGAGAAGATCA ACGAAGAGAATCTAGAGATTGTTTCATCCCATCTGAGGGAATCCATACCTTCAGGCTCTGAATCGCAGAAGATTCTGGATTGGAGCAAGCGGGTTGGGAA ATCTGAAGTTTGTTGCGATTTGGATGAATTTGAGGATCAGATGACTTCATTGGATCCTGCTGACTTTGTTGTTGTTCATGGAGCAGGTTCTTTTGGGCAT TTTCAAGCTAGCAAATCAGGAGTTCATAGAGGTGGATTAGAGAAACCTATTGTTAAGGCTGGATTTGTAGCTACCAGGATTTCAGTTACGACCCTTAATC TCGAGATTGTTCGAGCACTAGCTGCAGCTGGTATTCCATCGATCGGCATGTCTCCATTTTCGTGTGGATGGTTAACCTCTGAACGAAAGCTAGAGTCAGC TGATCTGTCAATGGTTGCTAAAGCAATCGAGTCAGGCTTCGTGCCGGTTTTGCATGGAGATGCCGTGCTCGACAAGAAACTGGGTTGCACGATACTGAGC GGCGATGTGATTATAAGGCATCTCGCTGCCTATCTGAAACCCGAATACGTCGTTTTCCTCGTATCCTTTCTTTCAACTTTTCCTCCTTTATACGACCTTC GTATTGTTTATCCGGTAACTGTAACTGTGACAGAAGAAGGTAGTTGGTCCGTGGTGAACCCAAGTCTCAGGAATGCTACCAAACCAGTTGAAATGACGGT AGCAGCACACGACACGACGGGAGGGATGGCGACCAAGATAGCAGAAGCTGCAATGATTGCGAAACTAGGCATCGATGTCTACATTGTGAAGGCGGCTACT AGCCATTCTCGGAGGGCTCTAAGCGGAGAAATAAGACGCGGGAGCATACCGGATGATTGGCTTGGGACCGCTATCAAGTTGAACGGCTAA
AA sequence Show only first row Show all	>Lus10026636 pacid=23164284 polypeptide=Lus10026636 locus=Lus10026636.g ID=Lus10026636.BGIv1.0 annot-version=v1.0 MEKPSKVQSLPTIRCIVKLGGAAITCKNELEKINEENLEIVSSHLRESIPSGSESQKILDWSKRVGKSEVCCDLDEFEDQMTSLDPADFVVVHGAGSFGH FQASKSGVHRGGLEKPIVKAGFVATRISVTTLNLEIVRALAAAGIPSIGMSPFSCGWLTSERKLESADLSMVAKAIESGFVPVLHGDAVLDKKLGCTILS GDVIIRHLAAYLKPEYVVFLVSFLSTFPPLYDLRIVYPVTVTVTEEGSWSVVNPSLRNATKPVEMTVAAHDTTGGMATKIAEAAMIAKLGIDVYIVKAAT SHSRRALSGEIRRGSIPDDWLGTAIKLNG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G26640			Amino acid kinase family prote...		Lus10026636 [exp]	0	1
AT3G01490			Protein kinase superfamily pro...		Lus10022227 [exp]	5.9	0.8700
AT4G11820		FKP1, EMB2778, ...	FLAKY POLLEN 1, hydroxymethylg...		Lus10002961 [exp]	15.0	0.8683
AT1G20670			DNA-binding bromodomain-contai...		Lus10022999 [exp]	15.1	0.8645
AT5G07720			Galactosyl transferase GMA12/M...		Lus10015721 [exp]	21.1	0.8545
AT1G52140			unknown protein		Lus10005478 [exp]	25.1	0.8638
AT3G55020			Ypt/Rab-GAP domain of gyp1p su...		Lus10041425 [exp]	29.3	0.8388
AT5G05670			signal recognition particle bi...		Lus10029130 [exp]	29.6	0.8514
AT4G24490		ATRGTA1	RAB geranylgeranyl transferase...		Lus10001518 [exp]	33.7	0.8621
AT5G59410			Rab5-interacting family protei...		Lus10040798 [exp]	39.1	0.8630
AT5G15140			Galactose mutarotase-like supe...		Lus10015365 [exp]	40.4	0.8486

Compare expression of checked genes

Lus10026636 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.