Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13950 295 / 4e-104 EIF5A, ATELF5A-1, EIF-5A eukaryotic elongation factor 5A-1 (.1) AT1G69410 288 / 9e-102 ATELF5A-3 eukaryotic elongation factor 5A-3 (.1) AT1G26630 265 / 2e-92 ATELF5A-2, FBR12 FUMONISIN B1-RESISTANT12, EUKARYOTIC ELONGATION FACTOR 5A-2, Eukaryotic translation initiation factor 5A-1 (eIF-5A 1) protein (.1), Eukaryotic translation initiation factor 5A-1 (eIF-5A 1) protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030422 [exp] 327 / 5e-117 AT1G13950 295 / 3e-104 eukaryotic elongation factor 5A-1 (.1) Lus10036801 [exp] 315 / 3e-112 AT1G13950 292 / 5e-103 eukaryotic elongation factor 5A-1 (.1) Lus10037129 [exp] 313 / 1e-111 AT1G13950 292 / 4e-103 eukaryotic elongation factor 5A-1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G185000 [exp] 318 / 2e-113 AT1G13950 291 / 6e-103 eukaryotic elongation factor 5A-1 (.1) Potri.018G107300 [exp] 313 / 3e-111 AT1G13950 290 / 4e-102 eukaryotic elongation factor 5A-1 (.1) Potri.008G092000 [exp] 309 / 8e-110 AT1G13950 292 / 5e-103 eukaryotic elongation factor 5A-1 (.1) Potri.010G162800 [exp] 306 / 2e-108 AT1G13950 286 / 7e-101 eukaryotic elongation factor 5A-1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0107 [flax] [poplar] KOW PF00467 [flax] [poplar] KOW KOW motif CL0021 [flax] [poplar] OB PF01287 [flax] [poplar] eIF-5a Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold
Representative CDS sequence Show only first row Show all	>Lus10026637 pacid=23164365 polypeptide=Lus10026637 locus=Lus10026637.g ID=Lus10026637.BGIv1.0 annot-version=v1.0 ATGTCTGACGAGGAGCATCACTTTGAGTCCAAGGCTGACGCCGGTGCCTCCAAAACTTACCCGCAGCAGGCTGGCACCATCCGTAAGAACGGCTACATCG TGATCAAGAACCGCCCATGCAAGGTTGTTGAAGTTTCCACTTCCAAGACTGGCAAGCATGGCCACGCCAAGTGCCACTTTGTTGGAATTGATATCTTCAA TGGAAAGAAGCTGGAAGATATCGTTCCCTCTTCCCACAATTGTGATGTTCCTCATGTGAATCGTGTCGATTACCAGCTCATCGACATCTCCGAGGATGGA TTCGTGAGCCTGCTGACTGACAATGGCAACACTAAGGATGATCTTAGGCTCCCCACTGATGAGGCTCTCCTCACTCAGATCAAGGATGGGTTTGCAGAGG GCAAGGACCTCGTCGTGTCTGTGATGTCTGCAATGGGAGAGGAGCAGATCAATGCTCTCAAGGATGTCGGCCCCAAGTAA
AA sequence Show only first row Show all	>Lus10026637 pacid=23164365 polypeptide=Lus10026637 locus=Lus10026637.g ID=Lus10026637.BGIv1.0 annot-version=v1.0 MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVNRVDYQLIDISEDG FVSLLTDNGNTKDDLRLPTDEALLTQIKDGFAEGKDLVVSVMSAMGEEQINALKDVGPK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G13950		EIF5A, ATELF5A-...	eukaryotic elongation factor 5...		Lus10026637 [exp]	0	1
AT1G13950		EIF5A, ATELF5A-...	eukaryotic elongation factor 5...		Lus10030422 [exp]	1.0	0.8985
					Lus10039878 [exp]	1.4	0.8896
AT5G05340			Peroxidase superfamily protein...		Lus10029065 [exp]	1.7	0.8720
AT5G50240		PIMT2, AtPIMT2	Arabidopsis thaliana protein-l...		Lus10017776 [exp]	3.5	0.8604
AT1G07530	GRAS	SCL14, ATGRAS2	GRAS \(GAI, RGA, SCR\) 2, ARAB...		Lus10016519 [exp]	5.9	0.8544
AT3G03980			NAD(P)-binding Rossmann-fold s...		Lus10002628 [exp]	6.0	0.8503
AT1G72460			Leucine-rich repeat protein ki...		Lus10027645 [exp]	7.4	0.8342
AT3G05200		ATL6	RING/U-box superfamily protein...		Lus10031515 [exp]	8.8	0.8491
AT5G17350			unknown protein		Lus10035268 [exp]	9.5	0.8399
AT1G65390		ATPP2-A5	phloem protein 2 A5 (.1.2)		Lus10040606 [exp]	9.7	0.8157

Compare expression of checked genes

Lus10026637 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.