Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G03350 262 / 1e-90 Protein of unknown function, DUF538 (.1) AT5G37070 176 / 6e-57 Protein of unknown function, DUF538 (.1) AT3G08890 173 / 9e-56 Protein of unknown function, DUF538 (.1.2) AT5G01610 162 / 2e-51 Protein of unknown function, DUF538 (.1) AT5G16380 62 / 3e-12 Protein of unknown function, DUF538 (.1) AT4G02360 61 / 6e-12 Protein of unknown function, DUF538 (.1) AT5G19860 60 / 2e-11 Protein of unknown function, DUF538 (.1) AT1G61667 54 / 2e-09 Protein of unknown function, DUF538 (.1) AT3G07470 49 / 2e-07 Protein of unknown function, DUF538 (.1) AT1G55265 49 / 3e-07 Protein of unknown function, DUF538 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030420 [exp] 361 / 9e-130 AT2G03350 259 / 1e-89 Protein of unknown function, DUF538 (.1) Lus10037126 [exp] 268 / 6e-93 AT2G03350 235 / 3e-80 Protein of unknown function, DUF538 (.1) Lus10036804 [exp] 251 / 2e-86 AT2G03350 224 / 9e-76 Protein of unknown function, DUF538 (.1) Lus10012232 [exp] 170 / 2e-54 AT3G08890 297 / 1e-104 Protein of unknown function, DUF538 (.1.2) Lus10002862 [exp] 169 / 7e-54 AT3G08890 299 / 2e-105 Protein of unknown function, DUF538 (.1.2) Lus10022674 [exp] 151 / 2e-46 AT3G08890 273 / 1e-94 Protein of unknown function, DUF538 (.1.2) Lus10012498 [exp] 124 / 6e-37 AT3G08890 214 / 1e-72 Protein of unknown function, DUF538 (.1.2) Lus10025861 [exp] 59 / 1e-10 AT3G07470 171 / 4e-54 Protein of unknown function, DUF538 (.1) Lus10019216 [exp] 55 / 2e-09 AT3G07470 185 / 5e-60 Protein of unknown function, DUF538 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G162400 [exp] 296 / 4e-104 AT2G03350 277 / 1e-96 Protein of unknown function, DUF538 (.1) Potri.008G092500 [exp] 295 / 1e-103 AT2G03350 281 / 4e-98 Protein of unknown function, DUF538 (.1) Potri.016G125300 [exp] 172 / 3e-55 AT3G08890 292 / 8e-103 Protein of unknown function, DUF538 (.1.2) Potri.006G104000 [exp] 168 / 1e-53 AT3G08890 296 / 1e-104 Protein of unknown function, DUF538 (.1.2) Potri.014G127500 [exp] 66 / 1e-13 AT4G02370 167 / 1e-53 Protein of unknown function, DUF538 (.1) Potri.001G008240 [exp] 61 / 9e-12 AT1G55265 137 / 8e-42 Protein of unknown function, DUF538 (.1) Potri.001G008320 [exp] 59 / 2e-11 AT1G55265 135 / 4e-41 Protein of unknown function, DUF538 (.1) Potri.011G032600 [exp] 45 / 3e-06 AT1G61667 177 / 1e-57 Protein of unknown function, DUF538 (.1) Potri.004G029600 [exp] 45 / 4e-06 AT1G61667 175 / 8e-57 Protein of unknown function, DUF538 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04398 [flax] [poplar] DUF538 Protein of unknown function, DUF538
Representative CDS sequence Show only first row Show all	>Lus10026639 pacid=23164215 polypeptide=Lus10026639 locus=Lus10026639.g ID=Lus10026639.BGIv1.0 annot-version=v1.0 ATGGAGAAGGCTCTCACTAAAGTCGGCAGCTTGAAGCTCGGAAATTCATGGATCTCCAAGAAAGCCAAGGAGGAGCTCACCAATATCAGCGATGACATCT CTACTTTCTCCAATACTGTTGAGGAGAAGGCCAAATGGATCTTCAACAAGCTGAAAGGAAAGCCACTGAAGAGCTTGCCAGATCTGTTGAGAGAGTTCAA CTTACCACCAGGGCTCTTCCCACAGAACGTGACCTGCTATGAGTTCGACGAGACCAAGGGGAAGCTGGTGGTGCACTTGCCTTCTGCGTGTGAGCTGACC TTCAAGGACTCGTCCGTGATCAGATACTCGACAAGGGTGAAGGCGATTCTCACGAGGGGGAAGCTGAACAACATAGATGGAATGAAGACCAAGGTGATCG TTTGGGTTAAAGTGTCGAATGTGGCGGTCGAAGGGTTCAAGTCTGATAAAGTGTGGTTCACTGCTGCTGGTGTGAAGAAGTCTAGGCCTAGGGTTCAGTA TGATGCCCTTCAGGCTGCTGTTAGGGTCGATGAATTCTGA
AA sequence Show only first row Show all	>Lus10026639 pacid=23164215 polypeptide=Lus10026639 locus=Lus10026639.g ID=Lus10026639.BGIv1.0 annot-version=v1.0 MEKALTKVGSLKLGNSWISKKAKEELTNISDDISTFSNTVEEKAKWIFNKLKGKPLKSLPDLLREFNLPPGLFPQNVTCYEFDETKGKLVVHLPSACELT FKDSSVIRYSTRVKAILTRGKLNNIDGMKTKVIVWVKVSNVAVEGFKSDKVWFTAAGVKKSRPRVQYDALQAAVRVDEF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G03350			Protein of unknown function, D...		Lus10026639 [exp]	0	1
AT5G17770		CBR1, ATCBR	NADH:cytochrome B5 reductase 1...		Lus10005682 [exp]	3.5	0.9023
AT4G10265			Wound-responsive family protei...		Lus10039754 [exp]	7.4	0.8458
AT5G03690			Aldolase superfamily protein (...		Lus10035571 [exp]	7.6	0.8902
AT4G10265			Wound-responsive family protei...		Lus10039761 [exp]	11.0	0.8363
AT1G65560			Zinc-binding dehydrogenase fam...		Lus10040589 [exp]	15.0	0.7629
AT3G23690	bHLH	bHLH077	basic helix-loop-helix (bHLH) ...		Lus10021968 [exp]	20.5	0.8546
AT1G08750			Peptidase C13 family (.1.2.3)		Lus10006571 [exp]	22.9	0.8306
AT1G13900			Purple acid phosphatases super...		Lus10026652 [exp]	24.0	0.8635
AT2G35860		FLA16	FASCICLIN-like arabinogalactan...		Lus10021247 [exp]	24.9	0.8786
AT1G08750			Peptidase C13 family (.1.2.3)		Lus10006570 [exp]	25.1	0.8258

Compare expression of checked genes

Lus10026639 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.