Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13940 210 / 2e-56 Plant protein of unknown function (DUF863) (.1) AT1G69360 205 / 5e-55 Plant protein of unknown function (DUF863) (.1) AT1G26620 180 / 8e-47 Plant protein of unknown function (DUF863) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030419 [exp] 1419 / 0 AT1G13940 397 / 1e-121 Plant protein of unknown function (DUF863) (.1) Lus10037122 [exp] 324 / 2e-98 AT1G69360 257 / 8e-74 Plant protein of unknown function (DUF863) (.1) Lus10036807 [exp] 313 / 4e-94 AT1G69360 254 / 9e-73 Plant protein of unknown function (DUF863) (.1) Lus10024611 [exp] 50 / 5e-06 AT1G12120 97 / 6e-22 Plant protein of unknown function (DUF863) (.1) Lus10034722 [exp] 50 / 7e-06 AT1G13940 106 / 3e-23 Plant protein of unknown function (DUF863) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G092800 [exp] 492 / 8e-159 AT1G13940 459 / 2e-144 Plant protein of unknown function (DUF863) (.1) Potri.010G162000 [exp] 439 / 1e-138 AT1G13940 437 / 2e-136 Plant protein of unknown function (DUF863) (.1) Potri.017G088900 [exp] 113 / 2e-25 AT1G69360 152 / 2e-37 Plant protein of unknown function (DUF863) (.1) Potri.004G125900 [exp] 107 / 1e-23 AT1G69360 149 / 2e-36 Plant protein of unknown function (DUF863) (.1) Potri.001G121200 [exp] 50 / 7e-06 AT1G62530 106 / 5e-25 Plant protein of unknown function (DUF863) (.1), Plant protein of unknown function (DUF863) (.2) Potri.003G112000 [exp] 49 / 2e-05 AT1G62530 109 / 4e-26 Plant protein of unknown function (DUF863) (.1), Plant protein of unknown function (DUF863) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05904 [flax] [poplar] DUF863 Plant protein of unknown function (DUF863)
Representative CDS sequence Show only first row Show all	>Lus10026640 pacid=23164270 polypeptide=Lus10026640 locus=Lus10026640.g ID=Lus10026640.BGIv1.0 annot-version=v1.0 ATGGATGAAGTTAAAAGGAAGGAACTTTATAAAATTCGGATGCGGGAGGTTGAGGCATCGGTGCCATCGAGCCCTTCTGCATCTCACGTTACGTCTGAAG ATGCTAGGAGACGGCATATCCCCGGATTTCCACTGGGGAATTCGGTTTGTACTCGTCCTTCTACGTCTGCTATTGATAATAATACCAATTCGCCCTTAAG TTCTGTCATGGGGAGCAGCACATATACTACTAGTCCGTTGCCCTTCCAGAACGGGACTACTTCGAAGGAAGTGGAGATATTGGAGTCTAGACCGACAAAG GTGAGGAGGAAGATGTTCGATCTTCGGCTTCCAGCTGATGAGTACATAATTACAGAAGAAGGGAGACCGCTAAAGGGCGTTCATAATTTGCCAGGAAATC TACAACATCGGAATCTGAATAACACTATGAAGGCCAACTGTCGAGATGATGTTTCGCTTGCTGAATCATGTCCAAGGGGGATCAGGACTAGTGTGGCTGA TTTGAACGAACCGATTGTGATTGAAGAAACTAATCCTTCTGAACATCCTTTCCATGGGAAGATTAGAGGGAGTGAATTGGATCGTAGACAGATGTCGTGG AAGTCTAATCACGGGAGCGATCATAAGGGTCCTTTGCCTCATCGTGATTTTCAGGCTAATGGTAATGGAAATCATCAATGGTTGATGAAACCTACGTGTG AAGAAAGCTTGCCATCGTCTTCACGGTCAATGCAAGCCCTTTTCAACAGAGCTCTCGAGCCGCCTCCTCCTAACTTCCCCATTGTTGATCATAAGAGGAA TCATCACCTGAGAGATAGTATTGAAAGCTTTAATAGCTGTCATCGAGAAGCGGTTATTGCTTCGAGTGTATCCAATCCATACCCGTTTGCTCCTGATCCG AGCAAGTCTTGGTCTCACTCGGCTCACTCAGTAGTGCATCATCCTCATTTGAACTCGTCTGCAACTTGGAGTAAGAGTCCTCAGTCGTCGACAACTCAAA GCAATGGGAAATTGGCAGATAGATGGAATTCTAACACCACCTCTACTTCTAACCAAAAGTTCGGAAGCGAAATGGCTAATCGAAATGGATATCAGCACAA TGGAATCTCCACCGGGTTGAATGAACTGCAGTTCTCTGTTCCTCCAAGAAGCTATGGTCAATTGAACCAGATCAATCATGGTTCAAGGTACATGGATTTG AAGCCTTTAAAAGGAGTGAACTTGAATGTAGCGATTTCGAATGGTTCGACGAATAAGGCGGGTACTCAACATGGCATTGAGGTCATAGATCTTGAGAGAA AGGATGACATCAGCAACCTTTCTTCTCTGCCTTGGCTGAGGGCGGAGATCGATCTCAATGCAGGGAAATCGAGCTTCTTGGGATCTTCTAATCATCCTGT TTGGCATGGTAATAAGAAATCAGCCTCTCAATCTACTAATCCTGAGTCCAGTAGGAATAAGGAGATTGACGACTCTACAGGCTGTAATGGTAAAATTCTT GGCTTTCCGATTTTCCGAAGTGCACATCTCCTTCCAAAGAAAGAAGCATCTTTTGAAGTGAAGGAGGTAGAAAACAAGGTAACACATATACTTTTCGATA TGAACATGCCCTGCGAGGACAATGACGATGTTGTTGAGCTTGTTAAGACCGAGAAAGCCGCCCAAGTTTCGAACTTTAGATGCGAGATCGACTTGAACTC TTGTGTAAGCGAAGATGAAGCTCCCGACTTTAAGAAGAAGCCGTTCACCGGAATAGACTTGGAAGCTCCGGTAGTTCCCGAGGCTGAAGAGGATGCCGGA ATAGACTTGCTAGCGAATGTCCACGAAGAAGAACCTTCACTATTAAGGCATCGAGAAGCTGAAAGACCGCTCGATGAACTAGCCAAAGTGGCAGCCGAGG CCATCATTGCAATCTCATCATCTGCTAGTTGTAGCATTGCTGAAGTGTCTGTCACAAATCCTCTTCAATGGTTTGCAGACGTGATCTCGTCTTGCGGGGA TTACTTAGAAAGCATAGTGGGAAATGCCACCTCATCGTCTTCCCATGAGGTGTTTGATTATTTCGAGTGGATGACACTGAAGCTGACCGAGACTAGAGAA GAAGATTACATGCCGAAGCCTCTAGTTCCCGAAGGCTTGATTAATCTCGACGAAATGGGAGCCACCACTAGCGTGGTGTTACCAACAACTCGAGGACGAA GGGGCAACGCCCGGAGAGGGAGGCAGAGGAGGGATTTCCAAAGGGACATTCTTCCGGGGCTCGTTTCTCTATCGAGGCATGAGGTGACCGAAGATATACA GACATTTGTAGGGCTAATGAGGGCGACAGGTCATCTTACGTGGCAGTCCGGATTAGCGAGAAGGGGCTCGACTAGAAATGGTTGCGGAAGAGGAAGGAGG CGATCGGTGGTTAGTTCCCCCCCTCCTCCTCTCGTGGATTTAAGTCCACCTCCTCCTCCGTTGATACAGCAACTGAAAACTATTGAAGTAGGAATGGAGG ATCGAAGCATCCGAGGTTGGGGTAAGACCACTAGGCGTCCACGTAGACAACGATGCCCTCCCGGTAACCTTCCATCCCTTCCTGTAACCTAG
AA sequence Show only first row Show all	>Lus10026640 pacid=23164270 polypeptide=Lus10026640 locus=Lus10026640.g ID=Lus10026640.BGIv1.0 annot-version=v1.0 MDEVKRKELYKIRMREVEASVPSSPSASHVTSEDARRRHIPGFPLGNSVCTRPSTSAIDNNTNSPLSSVMGSSTYTTSPLPFQNGTTSKEVEILESRPTK VRRKMFDLRLPADEYIITEEGRPLKGVHNLPGNLQHRNLNNTMKANCRDDVSLAESCPRGIRTSVADLNEPIVIEETNPSEHPFHGKIRGSELDRRQMSW KSNHGSDHKGPLPHRDFQANGNGNHQWLMKPTCEESLPSSSRSMQALFNRALEPPPPNFPIVDHKRNHHLRDSIESFNSCHREAVIASSVSNPYPFAPDP SKSWSHSAHSVVHHPHLNSSATWSKSPQSSTTQSNGKLADRWNSNTTSTSNQKFGSEMANRNGYQHNGISTGLNELQFSVPPRSYGQLNQINHGSRYMDL KPLKGVNLNVAISNGSTNKAGTQHGIEVIDLERKDDISNLSSLPWLRAEIDLNAGKSSFLGSSNHPVWHGNKKSASQSTNPESSRNKEIDDSTGCNGKIL GFPIFRSAHLLPKKEASFEVKEVENKVTHILFDMNMPCEDNDDVVELVKTEKAAQVSNFRCEIDLNSCVSEDEAPDFKKKPFTGIDLEAPVVPEAEEDAG IDLLANVHEEEPSLLRHREAERPLDELAKVAAEAIIAISSSASCSIAEVSVTNPLQWFADVISSCGDYLESIVGNATSSSSHEVFDYFEWMTLKLTETRE EDYMPKPLVPEGLINLDEMGATTSVVLPTTRGRRGNARRGRQRRDFQRDILPGLVSLSRHEVTEDIQTFVGLMRATGHLTWQSGLARRGSTRNGCGRGRR RSVVSSPPPPLVDLSPPPPPLIQQLKTIEVGMEDRSIRGWGKTTRRPRRQRCPPGNLPSLPVT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G13940			Plant protein of unknown funct...		Lus10026640 [exp]	0	1
AT4G24200			Transcription elongation facto...		Lus10009128 [exp]	4.0	0.8051
AT5G42940			RING/U-box superfamily protein...		Lus10010372 [exp]	4.9	0.7828
AT1G72390			unknown protein		Lus10013169 [exp]	12.1	0.7889
					Lus10000348 [exp]	14.1	0.7752
AT3G17900			unknown protein		Lus10036712 [exp]	14.8	0.7826
					Lus10022884 [exp]	19.0	0.7550
AT3G45830			unknown protein		Lus10036145 [exp]	23.4	0.7857
AT1G02660			alpha/beta-Hydrolases superfam...		Lus10010031 [exp]	27.7	0.7555
AT2G44520		COX10	cytochrome c oxidase 10 (.1)		Lus10019514 [exp]	28.8	0.6873
AT1G32200		ACT1, ATS1	ACYLTRANSFERASE 1, phospholipi...		Lus10000675 [exp]	31.7	0.7404

Compare expression of checked genes

Lus10026640 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.