Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G03380 353 / 1e-116 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G11290 211 / 2e-61 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G61170 206 / 8e-60 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G01580 201 / 9e-59 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G04370 198 / 3e-57 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G18750 199 / 8e-57 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G12770 196 / 2e-56 MEF22 mitochondrial editing factor 22 (.1) AT2G40720 194 / 2e-55 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G39530 191 / 4e-54 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G29760 189 / 6e-54 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030418 [exp] 630 / 0 AT2G03380 666 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10017446 [exp] 207 / 6e-60 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10018492 [exp] 202 / 1e-59 AT4G18750 385 / 2e-123 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10039703 [exp] 201 / 7e-59 AT4G18750 394 / 6e-127 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10021232 [exp] 191 / 1e-54 AT2G33680 818 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10001220 [exp] 192 / 2e-54 AT3G57430 1110 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10000706 [exp] 191 / 3e-54 AT3G12770 878 / 0.0 mitochondrial editing factor 22 (.1) Lus10022890 [exp] 190 / 6e-54 AT3G61170 865 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10024876 [exp] 189 / 2e-53 AT3G12770 886 / 0.0 mitochondrial editing factor 22 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G161800 [exp] 376 / 1e-124 AT2G03380 786 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.008G092900 [exp] 237 / 1e-73 AT2G03380 320 / 8e-102 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G191000 [exp] 208 / 2e-60 AT1G11290 1178 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G164900 [exp] 207 / 4e-60 AT5G13230 950 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.009G035100 [exp] 204 / 7e-60 AT4G13650 397 / 8e-126 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.012G108000 [exp] 202 / 4e-59 AT2G34400 640 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.004G059400 [exp] 201 / 2e-57 AT4G18750 1110 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G466066 [exp] 200 / 2e-57 AT4G33990 1067 / 0.0 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G006800 [exp] 199 / 3e-57 AT3G16610 687 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.003G058700 [exp] 196 / 7e-56 AT1G15510 1113 / 0.0 VANILLA CREAM 1, ARABIDOPSIS EARLY CHLOROPLAST BIOGENESIS2, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10026641 pacid=23164308 polypeptide=Lus10026641 locus=Lus10026641.g ID=Lus10026641.BGIv1.0 annot-version=v1.0 ATGGGTCATGTTCTGACCGGGCTGGTTGATATGTATTCCAAATGCGGGGAGATCGGATCTGCGAGAGAGGTGTTTGAAGAAGAAGATAAATTCGATAGAT GTGTAATGACATGGACATCGATGATTTCGGGTTACATACAGAATGATCGAGCTAACAAGTTTACTCTACGGAGCTTGCTTACCGCGTGTGCAAAGCTGCA GGGTAAGTGGATTCACGGATACATAATTAAGAACGGTGTCGAAGTGAATTCTTATCTCGAAACATCTCTGGTAAATATGTATCTCAAATGTGGTAGCCTT ATCGATGCCAGGTCAGCATTTAACGAGCTTTCTTCTTCTGTTCCGGATCTCATCTCTTGGACTACTATGATTGTTGGCTATGCTCAAGGAGGCTTCCCTG ATGAGGCTTTGCGTTTGTTCGTCGATAGGAAGTGGGAATCCATCTCACCGGACGGAATCACCATTTCCAGAGTGCTGTCATCTTGTGCACAAATTGGTTG GTTGAGCTTAGGAAAGTCTGCTCATTGTGTTGGTGTTAAGCTCGGATTATTGGATGCTAATGTCGTCAATGCTTTGATCGACATGTACGCGAAAAACAAC GAGAATTTGGACTCTTTTCGTGTGTTTCAAACAATGTCGAACACTAACGATGTGGTAGCGTGGAACTCGATTGTTTCCGGTTACTCGCAGAACGGCTCTG CACATGAATCACTTGCATTGTTCCACGAAATGAGAACGAAATCGTCGATCTTACCGGATGCAATTACTCTAGTTAGTACCTTCTCTGCTTTTGGAACCCT AGGAGCTCTTCCTGCTGGCTCTTCCCTTCATTCTTGTTCCATCAAAGTAGGATTCTTTCCTGCTAGTGTTTATCTTGGTACTGCAATTCTGACCTTCTAT GCCAAATGTGGAGATGCTCTATCGTCTCGTGGAGTGTTCGACGAAATGGAAGAGAAGAATATCGCCATGTGGAGCGCCATGATTGGTGGATATGGACTCA GAGGGATTCTGTTTGCTTCTCTTGCACTCTTCAACACAATGCTGAGTGTTAACTCACTGCAGCCTAACGAAGCGGTCTTTACATCGATTATCGGGTTGCA GCCATACCGGGATGGTCGGTGA
AA sequence Show only first row Show all	>Lus10026641 pacid=23164308 polypeptide=Lus10026641 locus=Lus10026641.g ID=Lus10026641.BGIv1.0 annot-version=v1.0 MGHVLTGLVDMYSKCGEIGSAREVFEEEDKFDRCVMTWTSMISGYIQNDRANKFTLRSLLTACAKLQGKWIHGYIIKNGVEVNSYLETSLVNMYLKCGSL IDARSAFNELSSSVPDLISWTTMIVGYAQGGFPDEALRLFVDRKWESISPDGITISRVLSSCAQIGWLSLGKSAHCVGVKLGLLDANVVNALIDMYAKNN ENLDSFRVFQTMSNTNDVVAWNSIVSGYSQNGSAHESLALFHEMRTKSSILPDAITLVSTFSAFGTLGALPAGSSLHSCSIKVGFFPASVYLGTAILTFY AKCGDALSSRGVFDEMEEKNIAMWSAMIGGYGLRGILFASLALFNTMLSVNSLQPNEAVFTSIIGLQPYRDGR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G03380			Pentatricopeptide repeat (PPR)...		Lus10026641 [exp]	0	1
AT2G28180		CHX08, ATCHX8	CATION/H+ EXCHANGER 8, Cation...		Lus10021415 [exp]	7.7	0.8934
AT3G57440			unknown protein		Lus10042062 [exp]	13.9	0.8804
AT1G13810			Restriction endonuclease, type...		Lus10033589 [exp]	14.4	0.8302
AT1G13810			Restriction endonuclease, type...		Lus10012108 [exp]	15.1	0.8465
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10003275 [exp]	16.1	0.8726
AT3G50120			Plant protein of unknown funct...		Lus10019324 [exp]	17.5	0.8210
AT2G37360		ABCG2	ATP-binding cassette G2, ABC-2...		Lus10018624 [exp]	17.5	0.8788
					Lus10037918 [exp]	17.8	0.7309
AT1G66140	C2H2ZnF	ZFP4	zinc finger protein 4 (.1)		Lus10035169 [exp]	19.7	0.8780
AT2G38560		RDO2, TFIIS	REDUCED DORMANCY 2, transcript...		Lus10029016 [exp]	24.7	0.8730

Compare expression of checked genes

Lus10026641 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.