Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69350 96 / 2e-23 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G52850 69 / 4e-14 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G66520 61 / 3e-11 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G12770 59 / 1e-10 MEF22 mitochondrial editing factor 22 (.1) AT4G35130 56 / 8e-10 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G31920 55 / 2e-09 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G37570 54 / 5e-09 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT3G63370 54 / 5e-09 OTP86 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G25270 54 / 5e-09 OTP70 organelle transcript processing 70, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G03380 54 / 7e-09 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014950 [exp] 65 / 1e-12 AT5G52850 683 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10029436 [exp] 64 / 2e-12 AT3G08820 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10018492 [exp] 62 / 6e-12 AT4G18750 385 / 2e-123 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10039703 [exp] 62 / 7e-12 AT4G18750 394 / 6e-127 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10024876 [exp] 60 / 7e-11 AT3G12770 886 / 0.0 mitochondrial editing factor 22 (.1) Lus10031714 [exp] 59 / 8e-11 AT4G25270 672 / 0.0 organelle transcript processing 70, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10000706 [exp] 59 / 9e-11 AT3G12770 878 / 0.0 mitochondrial editing factor 22 (.1) Lus10002024 [exp] 56 / 9e-10 AT5G56310 344 / 6e-113 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10002552 [exp] 55 / 3e-09 AT2G22410 299 / 2e-97 SLOW GROWTH 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G093000 [exp] 118 / 2e-31 AT1G69350 832 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G047800 [exp] 64 / 2e-12 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G152000 [exp] 62 / 1e-11 AT3G12770 931 / 0.0 mitochondrial editing factor 22 (.1) Potri.006G105700 [exp] 62 / 1e-11 AT3G08820 810 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G178200 [exp] 61 / 2e-11 AT4G35130 919 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G071800 [exp] 57 / 3e-10 AT5G52850 803 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G135400 [exp] 57 / 3e-10 AT1G31920 738 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G006800 [exp] 57 / 5e-10 AT3G16610 687 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.002G220300 [exp] 57 / 6e-10 AT1G11290 559 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G128900 [exp] 57 / 6e-10 AT3G08820 812 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10026642 pacid=23164404 polypeptide=Lus10026642 locus=Lus10026642.g ID=Lus10026642.BGIv1.0 annot-version=v1.0 ATGAGCTCGCTGATCATAAACCTTCCCACGCAGCTCTTCGACGATGACGCTCTACATACCAATGTTCAGAGCAAGCACGACTCCATGGCTCATCACACAG CTCCACGCCCATCTCTTCGTCACAGGCCTCCACCACGACCCGCAAGCTTCAACAAAGCTCATCGAGTCATATTCACAAACATCTTCCCTGCATTCCGCCG CGCTCGCCTTCAAATCCCTTCTCCCGATTCCTTCATGTGGGGGGTGATCCTCAAGTGCCACGTCTGGTCACATCAGTATCAACCCGCCATTTCGCTCTAC CACGACATGCTCTACTCCGGAACTCCCGTCGGTGGATTCGTGTTTCCTTCCGCTCTGAGGGCTTGTGCCGGATTTGGCGATGTGGGTGTTGGAATGAAGG TTCACGGGAGTGTTACCAAGCTCGGGTTCGATTCCGATCCGGTTACCGAAACCTCGCTTTAA
AA sequence Show only first row Show all	>Lus10026642 pacid=23164404 polypeptide=Lus10026642 locus=Lus10026642.g ID=Lus10026642.BGIv1.0 annot-version=v1.0 MSSLIINLPTQLFDDDALHTNVQSKHDSMAHHTAPRPSLRHRPPPRPASFNKAHRVIFTNIFPAFRRARLQIPSPDSFMWGVILKCHVWSHQYQPAISLY HDMLYSGTPVGGFVFPSALRACAGFGDVGVGMKVHGSVTKLGFDSDPVTETSL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G69350			Tetratricopeptide repeat (TPR)...		Lus10026642 [exp]	0	1
AT1G28270		RALFL4	ralf-like 4 (.1)		Lus10025444 [exp]	4.6	0.6595
					Lus10012623 [exp]	22.4	0.5960
					Lus10032803 [exp]	60.5	0.5570
AT3G16180			Major facilitator superfamily ...		Lus10009506 [exp]	62.3	0.5553
					Lus10033149 [exp]	63.1	0.5553
AT1G47960		ATC/VIF1, C/VIF...	cell wall / vacuolar inhibitor...		Lus10023215 [exp]	63.8	0.5553
AT3G14040			Pectin lyase-like superfamily ...		Lus10023364 [exp]	64.6	0.5553
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Lus10027028 [exp]	65.3	0.5553
AT5G33340		CDR1	CONSTITUTIVE DISEASE RESISTANC...		Lus10003281 [exp]	66.1	0.5553
AT1G21880		LYM1	lysm domain GPI-anchored prote...		Lus10006200 [exp]	66.8	0.5553

Compare expression of checked genes

Lus10026642 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.