Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G47730 269 / 1e-91 GST6, ATGSTF5, ATGSTF8 Arabidopsis thaliana glutathione S-transferase phi 8, GLUTATHIONE S-TRANSFERASE \(CLASS PHI\) 5, glutathione S-transferase phi 8 (.1) AT1G02930 248 / 3e-84 ATGST1, GST1, ERD11, ATGSTF3, ATGSTF6 EARLY RESPONSIVE TO DEHYDRATION 11, ARABIDOPSIS THALIANA GLUATIONE S-TRANSFERASE F3, ARABIDOPSIS GLUTATHIONE S-TRANSFERASE 1, glutathione S-transferase 6 (.1.2) AT1G02920 246 / 3e-83 ATGST11, GST11, ATGSTF8, ATGSTF7 ARABIDOPSIS GLUTATHIONE S-TRANSFERASE 11, glutathione S-transferase 7 (.1) AT2G02930 243 / 5e-82 GST16, ATGSTF3 GLUTATHIONE S-TRANSFERASE 16, glutathione S-transferase F3 (.1) AT4G02520 242 / 8e-82 GST2, ATPM24.1, ATGSTF2 glutathione S-transferase PHI 2 (.1) AT1G02950 232 / 4e-77 GST31, ATGSTF4 GLUTATHIONE S-TRANSFERASE 31, glutathione S-transferase F4 (.1.2.3.4) AT1G02940 208 / 1e-67 ATGSTF5 glutathione S-transferase (class phi) 5 (.1) AT3G62760 189 / 6e-61 ATGSTF13 Glutathione S-transferase family protein (.1) AT3G03190 166 / 7e-52 ATGSTF6, ATGSTF11 ARABIDOPSIS GLUTATHIONE-S-TRANSFERASE 6, glutathione S-transferase F11 (.1) AT1G49860 166 / 3e-51 ATGSTF14 glutathione S-transferase (class phi) 14 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030414 [exp] 419 / 8e-152 AT2G47730 267 / 1e-90 Arabidopsis thaliana glutathione S-transferase phi 8, GLUTATHIONE S-TRANSFERASE \(CLASS PHI\) 5, glutathione S-transferase phi 8 (.1) Lus10037121 [exp] 312 / 3e-109 AT2G47730 243 / 2e-81 Arabidopsis thaliana glutathione S-transferase phi 8, GLUTATHIONE S-TRANSFERASE \(CLASS PHI\) 5, glutathione S-transferase phi 8 (.1) Lus10004151 [exp] 194 / 1e-62 AT2G30860 194 / 1e-62 glutathione S-transferase PHI 9 (.1.2) Lus10001419 [exp] 176 / 2e-55 AT2G30860 297 / 3e-103 glutathione S-transferase PHI 9 (.1.2) Lus10020735 [exp] 173 / 2e-54 AT2G30860 334 / 4e-118 glutathione S-transferase PHI 9 (.1.2) Lus10029815 [exp] 172 / 3e-54 AT2G30860 332 / 2e-117 glutathione S-transferase PHI 9 (.1.2) Lus10040393 [exp] 168 / 2e-52 AT3G03190 263 / 1e-89 ARABIDOPSIS GLUTATHIONE-S-TRANSFERASE 6, glutathione S-transferase F11 (.1) Lus10005634 [exp] 166 / 1e-51 AT2G30860 177 / 1e-55 glutathione S-transferase PHI 9 (.1.2) Lus10020736 [exp] 164 / 4e-51 AT2G30860 308 / 6e-108 glutathione S-transferase PHI 9 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G207093 [exp] 283 / 1e-97 AT1G02930 263 / 5e-90 EARLY RESPONSIVE TO DEHYDRATION 11, ARABIDOPSIS THALIANA GLUATIONE S-TRANSFERASE F3, ARABIDOPSIS GLUTATHIONE S-TRANSFERASE 1, glutathione S-transferase 6 (.1.2) Potri.002G207479 [exp] 282 / 2e-97 AT1G02930 267 / 1e-91 EARLY RESPONSIVE TO DEHYDRATION 11, ARABIDOPSIS THALIANA GLUATIONE S-TRANSFERASE F3, ARABIDOPSIS GLUTATHIONE S-TRANSFERASE 1, glutathione S-transferase 6 (.1.2) Potri.002G207286 [exp] 279 / 3e-96 AT1G02930 263 / 4e-90 EARLY RESPONSIVE TO DEHYDRATION 11, ARABIDOPSIS THALIANA GLUATIONE S-TRANSFERASE F3, ARABIDOPSIS GLUTATHIONE S-TRANSFERASE 1, glutathione S-transferase 6 (.1.2) Potri.002G207672 [exp] 211 / 1e-69 AT3G62760 302 / 2e-105 Glutathione S-transferase family protein (.1) Potri.014G132200 [exp] 207 / 8e-68 AT3G62760 295 / 2e-102 Glutathione S-transferase family protein (.1) Potri.002G015200 [exp] 186 / 1e-59 AT3G03190 208 / 4e-68 ARABIDOPSIS GLUTATHIONE-S-TRANSFERASE 6, glutathione S-transferase F11 (.1) Potri.002G015100 [exp] 170 / 2e-53 AT3G03190 196 / 2e-63 ARABIDOPSIS GLUTATHIONE-S-TRANSFERASE 6, glutathione S-transferase F11 (.1) Potri.017G138800 [exp] 169 / 7e-53 AT5G17220 265 / 1e-90 TRANSPARENT TESTA 19, GLUTATHIONE S-TRANSFERASE 26, ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE PHI 12, glutathione S-transferase phi 12 (.1) Potri.001G105600 [exp] 68 / 9e-14 AT5G41210 358 / 1e-126 glutathione S-transferase THETA 1 (.1) Potri.004G232600 [exp] 66 / 7e-13 AT2G02390 306 / 2e-106 GLUTATHIONE S-TRANSFERASE 18, glutathione S-transferase zeta 1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF02798 [flax] [poplar] GST_N Glutathione S-transferase, N-terminal domain CL0497 [flax] [poplar] GST_C PF00043 [flax] [poplar] GST_C Glutathione S-transferase, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10026643 pacid=23164337 polypeptide=Lus10026643 locus=Lus10026643.g ID=Lus10026643.BGIv1.0 annot-version=v1.0 ATGGCAGGGATCAAGGTGTACGGAAGCCCCTTCTCGACGGCCACTCAGAGGGTGATCGCCACTCTGTACGAGAAGGATGTGGAGTTCGAGTTCGTCAAGG TCGACATGGCCAAGGGCGAGCACAAGCAGGAGTCTTTCCTTGCTCTTAACCCGTTTGGTCAGGTTCCTGCTTATCAAGAAGGCGATTTGACCCTCTTCGA ATCAAGGGCAATCACGCAGCACATTGCAGAGAAGTACTCGAGCAAGGGAACACAGCTGATCGTTTCCGAGCCAGAGTTCAAAGTCTGGCAGCAAGTCGAA ATCAACAAGTTCGACCCAGCCAGCTCGCCACTGGGCTGGGAGCAGGTGTTCAAGCCGATGTTCGGGATGACAACCGATGCAGCAGCTGTGGAAACCAACG AAAAAAAGCTCGGTCAAGTCCTGGACGTGTACGAGGCAAGGCTGTCGAAATCAAAGTACTTGGGAGGAGACCAGTTCTCATTGGTGGATCTTCACCACCT CCCTAACATCCAGGTTCTGCAGGGAACCCCCACGAAGAAGCTGTTCGATTCGCACCCCAAGGTCGCGGCTTGGATCGCTGACATTGCCGGTAGGCCTGCC TGGACCAAGGTTCTTGATCTCCAGAAGCAGTGA
AA sequence Show only first row Show all	>Lus10026643 pacid=23164337 polypeptide=Lus10026643 locus=Lus10026643.g ID=Lus10026643.BGIv1.0 annot-version=v1.0 MAGIKVYGSPFSTATQRVIATLYEKDVEFEFVKVDMAKGEHKQESFLALNPFGQVPAYQEGDLTLFESRAITQHIAEKYSSKGTQLIVSEPEFKVWQQVE INKFDPASSPLGWEQVFKPMFGMTTDAAAVETNEKKLGQVLDVYEARLSKSKYLGGDQFSLVDLHHLPNIQVLQGTPTKKLFDSHPKVAAWIADIAGRPA WTKVLDLQKQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G47730		GST6, ATGSTF5, ...	Arabidopsis thaliana glutathio...		Lus10026643 [exp]	0	1
AT2G29420		GST25, ATGSTU7	GLUTATHIONE S-TRANSFERASE 25, ...		Lus10016467 [exp]	3.7	0.9340
AT3G01980			NAD(P)-binding Rossmann-fold s...		Lus10012548 [exp]	5.8	0.9340
AT1G22150		SULTR1;3	sulfate transporter 1;3 (.1)		Lus10041111 [exp]	6.2	0.9017
AT3G49150			F-box/RNI-like superfamily pro...		Lus10025561 [exp]	8.8	0.9231
AT3G26770			NAD(P)-binding Rossmann-fold s...		Lus10012575 [exp]	10.1	0.9130
AT3G22200		HER1, GABA-T, P...	POLLEN-PISTIL INCOMPATIBILITY ...		Lus10003810 [exp]	12.6	0.9157
AT3G57230	MADS	AGL16	AGAMOUS-like 16 (.1.2)		Lus10028215 [exp]	12.7	0.9046
AT5G08170		ATAIH, EMB1873	EMBRYO DEFECTIVE 1873, AGMATIN...		Lus10042920 [exp]	18.2	0.8768
AT5G41810			unknown protein		Lus10001907 [exp]	19.7	0.9139
AT3G13620			Amino acid permease family pro...		Lus10013757 [exp]	22.2	0.9027

Compare expression of checked genes

Lus10026643 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.