Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55050 108 / 1e-26 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G74460 104 / 2e-25 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT3G50400 102 / 2e-24 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT2G23540 102 / 2e-24 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G37690 100 / 7e-24 SGNH hydrolase-type esterase superfamily protein (.1) AT4G10950 91 / 2e-20 SGNH hydrolase-type esterase superfamily protein (.1) AT4G28780 83 / 1e-17 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G33811 82 / 3e-17 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G41890 82 / 3e-17 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G71250 79 / 2e-16 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026647 [exp] 237 / 5e-76 AT5G55050 159 / 4e-45 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10004668 [exp] 228 / 1e-72 AT5G55050 184 / 6e-55 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10017903 [exp] 157 / 8e-47 AT4G28780 85 / 3e-19 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10017904 [exp] 154 / 3e-44 AT2G23540 117 / 8e-30 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10030411 [exp] 153 / 2e-43 AT5G55050 158 / 1e-44 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10030410 [exp] 152 / 7e-43 AT5G55050 147 / 1e-40 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10030412 [exp] 137 / 2e-40 AT5G55050 48 / 2e-07 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10011312 [exp] 135 / 1e-37 AT1G29670 88 / 7e-20 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10012135 [exp] 129 / 8e-36 AT1G29670 84 / 8e-19 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G089700 [exp] 120 / 3e-31 AT5G55050 375 / 3e-129 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.012G068700 [exp] 116 / 1e-29 AT1G74460 549 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.007G036300 [exp] 114 / 5e-29 AT2G23540 554 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.005G104900 [exp] 111 / 1e-27 AT5G55050 209 / 7e-64 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.017G130100 [exp] 105 / 6e-26 AT5G37690 526 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1) Potri.004G180400 [exp] 102 / 1e-24 AT4G28780 200 / 4e-61 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G024700 [exp] 100 / 7e-24 AT5G33370 549 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.004G086700 [exp] 95 / 4e-22 AT5G37690 527 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1) Potri.019G024600 [exp] 94 / 8e-22 AT5G33370 568 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.008G104700 [exp] 93 / 4e-21 AT2G23540 280 / 1e-91 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [flax] [poplar] SGNH_hydrolase PF00657 [flax] [poplar] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Lus10026644 pacid=23164400 polypeptide=Lus10026644 locus=Lus10026644.g ID=Lus10026644.BGIv1.0 annot-version=v1.0 ATGGCGACGAAACCAATATTCGTCCTCTGCCTACTGTGGATGTTGGTGGTGGTGAATCCGCCACTTCAGTGTTCATCGCAGGAGGATGAAGACGGAGACG AAGCCGACAAAATCAACGATCCTCCGATTTGTGGGATCTTCATGGGTGGCACCCCTGTTGAGGTTGGGACGAACAAATACTTGAGTTTAAGCACCGCAAA GGCTAACTTCCCTCCAAATGGGATCGATTTCCCGAACTCCGAGGCCACCGGAAGATCTAGCGACGGCTATACTATGGCCGACTATATTGGAACGCAGGTC AACCAGTTCATGGGTTTGGCGAGAGACCTGCGAACTGCGTTGAACAGAAGCGTTGTCGATGCTTACCTTCGCGACTGCGTATACTGTATCGCGACCGGAA GCACCGACATAGCAGAGCAACTAGACAATCCCTCTTTCATGGACACATTGTTCCTCTCCAGATTCATAAGAGAGTACATTGGACATATTCAGGATCTATA TAATATTGCGGCTCGAAGGATGGTGTTCATAACTCCTCCGCCAGTCGGGTGCACTCCGTCCGGTCGAGCTATGAGCCCGAACGGCAGCTGCAACGCCAGA GCGAATGCACTGTCGGGGGCTATCCCGTCACGGCTGGCTCTCGCCATGAGAGCGCTCAGCCTTCGAAACCGGGACATGACTTATTCCATTGCCAATAGCA ATGACATGGTGTTGGATATCATCAGGAATTATTCATCATACGGTATAACGAATGTGATCGATGCATGCTGTGGGAACGGAACGACACCGTGCACCCCGAA CTCGACCCTCTGCGAGGACCGCATCGGGCACTTGTACTGGAATCGGTACCAACTATCTCAAAGTGGCGCCGCATTGGTCATTGATGGCGCGTTTAGCAAC AATTCGAGATACACAACCCCTGTGAACTTTGATGAGGTAATCAACAGCCGATGA
AA sequence Show only first row Show all	>Lus10026644 pacid=23164400 polypeptide=Lus10026644 locus=Lus10026644.g ID=Lus10026644.BGIv1.0 annot-version=v1.0 MATKPIFVLCLLWMLVVVNPPLQCSSQEDEDGDEADKINDPPICGIFMGGTPVEVGTNKYLSLSTAKANFPPNGIDFPNSEATGRSSDGYTMADYIGTQV NQFMGLARDLRTALNRSVVDAYLRDCVYCIATGSTDIAEQLDNPSFMDTLFLSRFIREYIGHIQDLYNIAARRMVFITPPPVGCTPSGRAMSPNGSCNAR ANALSGAIPSRLALAMRALSLRNRDMTYSIANSNDMVLDIIRNYSSYGITNVIDACCGNGTTPCTPNSTLCEDRIGHLYWNRYQLSQSGAALVIDGAFSN NSRYTTPVNFDEVINSR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G28780			GDSL-like Lipase/Acylhydrolase...		Lus10026644 [exp]	0	1

Compare expression of checked genes

Lus10026644 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.