Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55050 129 / 4e-34 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT2G23540 113 / 5e-28 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT3G50400 101 / 8e-24 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G71250 100 / 1e-23 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G74460 99 / 3e-23 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G37690 96 / 5e-22 SGNH hydrolase-type esterase superfamily protein (.1) AT3G16370 92 / 1e-20 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G41890 91 / 2e-20 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G06990 89 / 1e-19 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT4G18970 89 / 1e-19 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030409 [exp] 561 / 0 AT5G55050 157 / 2e-44 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10030410 [exp] 535 / 0 AT5G55050 147 / 1e-40 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10030411 [exp] 534 / 0 AT5G55050 158 / 1e-44 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10017904 [exp] 327 / 1e-110 AT2G23540 117 / 8e-30 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10004668 [exp] 199 / 9e-61 AT5G55050 184 / 6e-55 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10036966 [exp] 186 / 1e-55 AT3G04290 198 / 3e-60 Li-tolerant lipase 1 (.1) Lus10037113 [exp] 186 / 3e-55 AT3G04290 192 / 6e-58 Li-tolerant lipase 1 (.1) Lus10026647 [exp] 185 / 4e-55 AT5G55050 159 / 4e-45 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10037112 [exp] 182 / 5e-54 AT5G55050 176 / 1e-51 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G104900 [exp] 163 / 1e-46 AT5G55050 209 / 7e-64 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.004G180400 [exp] 149 / 2e-41 AT4G28780 200 / 4e-61 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.011G089700 [exp] 126 / 5e-33 AT5G55050 375 / 3e-129 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.012G068700 [exp] 103 / 1e-24 AT1G74460 549 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.008G104600 [exp] 100 / 2e-23 AT2G23540 370 / 3e-127 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.017G130100 [exp] 99 / 4e-23 AT5G37690 526 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1) Potri.007G036300 [exp] 99 / 4e-23 AT2G23540 554 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.008G104700 [exp] 97 / 4e-22 AT2G23540 280 / 1e-91 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.011G076500 [exp] 96 / 4e-22 AT5G45670 533 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.013G153000 [exp] 96 / 5e-22 AT2G30220 355 / 1e-121 GDSL-like Lipase/Acylhydrolase family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10026645 pacid=23164202 polypeptide=Lus10026645 locus=Lus10026645.g ID=Lus10026645.BGIv1.0 annot-version=v1.0 ATGGGTTCGAAATTCGAGCTATTGTTGACATACTTCTTGTGGGTGGTTCTTCTAAATAATCCTCTTCAGTGTTCGTCACAGAGCAGCTGCTCGAACGTTA CGGGGTTGTTCATACTCGGTGGCTTCTCGCACGATGTCGGGGAGAACAACTACTTGAACACGTCGGCGAAAGCTAACCAACCGTTCAACGGCATTGATTT TCCCGGCTCTGTTCCCACCGGCAGGCTTAGCAACGGAAAAACTCTGGCCGATGCGGTTGCTGCCTTGTTTTGTTATGGCTTAAGTCCGCCACCGTACTTC GTGCATTACTACTCCGACGACTTCATCCAGAGTGTTTTAGCCAGCGGCGGAGCTAACATGGCTTCGGGAGGCTCCGGTGTTTTCAACTCGACCGGCCGGG CTATGTTTAATGAAGTGATACCATTAGGACAACAGGTGGACCAACTACTCACAATCTTCCGTAACCTGACGGCCAGACTGGGCCCCCAGGCCGCGGCCGA TTACTTGGACCGGAGTGTTTCCGTGCTAGTCCCAGCAAGTGCCGACATCATCGAACAAGCAGTGAACGGGACCGCCCTCAGCGACTTGGTCTTCCTTAAC CGGCTTGTACTCCAACTCCTTCGTTATATTCGGACTATATACACAAACAGACTTACGAGGTTTGCGATAGTATCACCTCCATCGATTGGATGCAGCCCAT TTGGCCGGTCTTTCAATCCGACCGGCGGATGCTTCCGTAGAGCCGATACCCTGGTGGATGGTTTCATAGACCGCCTCCGTCTCGCCATGGAAGTGCAGAG TCTTTTGTCTCCCGGACTCCGATATGCAATCGGAGATGCTTATAGGGTTAACTTGCTATTCACTGAAAATCCCCAACCATTTGGTTTCACGAATGTGACG GCTGCCTGCTGTGGGAACGCAACGACCCCGTGTAACCCGACTTCACCCCTATGCGGGAACAGTACTGTTCGCAACCAATACGTGTATTGGAGTCAATACC TACTTACAGAGCGTGCCGCGACTTTGACAGCTAACTTCTTTGCTACCGGCGATGACTATGTCTCCCCCATCGCCTTCCCCGAGCTTGTCGGACGGTGA
AA sequence Show only first row Show all	>Lus10026645 pacid=23164202 polypeptide=Lus10026645 locus=Lus10026645.g ID=Lus10026645.BGIv1.0 annot-version=v1.0 MGSKFELLLTYFLWVVLLNNPLQCSSQSSCSNVTGLFILGGFSHDVGENNYLNTSAKANQPFNGIDFPGSVPTGRLSNGKTLADAVAALFCYGLSPPPYF VHYYSDDFIQSVLASGGANMASGGSGVFNSTGRAMFNEVIPLGQQVDQLLTIFRNLTARLGPQAAADYLDRSVSVLVPASADIIEQAVNGTALSDLVFLN RLVLQLLRYIRTIYTNRLTRFAIVSPPSIGCSPFGRSFNPTGGCFRRADTLVDGFIDRLRLAMEVQSLLSPGLRYAIGDAYRVNLLFTENPQPFGFTNVT AACCGNATTPCNPTSPLCGNSTVRNQYVYWSQYLLTERAATLTANFFATGDDYVSPIAFPELVGR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G55050			GDSL-like Lipase/Acylhydrolase...		Lus10026645 [exp]	0	1

Compare expression of checked genes

Lus10026645 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.