Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71250 72 / 1e-13 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G29670 71 / 2e-13 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G45670 67 / 7e-12 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G37690 67 / 7e-12 SGNH hydrolase-type esterase superfamily protein (.1) AT4G18970 64 / 4e-11 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT1G29660 62 / 1e-10 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G73610 62 / 2e-10 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G23500 59 / 2e-09 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G58520 59 / 2e-09 RXW8 lipases;hydrolases, acting on ester bonds (.1.2.3) AT3G43550 57 / 5e-09 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004668 [exp] 253 / 3e-81 AT5G55050 184 / 6e-55 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10011312 [exp] 213 / 7e-67 AT1G29670 88 / 7e-20 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10026647 [exp] 215 / 3e-66 AT5G55050 159 / 4e-45 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10012135 [exp] 195 / 3e-60 AT1G29670 84 / 8e-19 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10017903 [exp] 166 / 2e-49 AT4G28780 85 / 3e-19 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10026644 [exp] 132 / 2e-35 AT4G28780 113 / 2e-28 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10023578 [exp] 110 / 7e-29 AT4G28780 84 / 7e-20 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10030409 [exp] 87 / 8e-19 AT5G55050 157 / 2e-44 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10037113 [exp] 82 / 5e-17 AT3G04290 192 / 6e-58 Li-tolerant lipase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G104900 [exp] 74 / 3e-14 AT5G55050 209 / 7e-64 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.006G166800 [exp] 63 / 1e-10 AT5G45670 300 / 9e-100 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.007G133766 [exp] 63 / 1e-10 AT3G14225 291 / 4e-96 GDSL-motif lipase 4 (.1) Potri.006G166701 [exp] 62 / 1e-10 AT5G45670 300 / 1e-99 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.006G144400 [exp] 62 / 1e-10 AT3G16370 375 / 2e-130 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.018G063901 [exp] 62 / 2e-10 AT1G53920 302 / 4e-100 GDSL-motif lipase 5 (.1) Potri.004G180400 [exp] 61 / 3e-10 AT4G28780 200 / 4e-61 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G024600 [exp] 61 / 3e-10 AT5G33370 568 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.004G064500 [exp] 61 / 4e-10 AT1G29670 527 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.002G018800 [exp] 61 / 5e-10 AT1G75900 415 / 2e-144 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10026646 pacid=23164339 polypeptide=Lus10026646 locus=Lus10026646.g ID=Lus10026646.BGIv1.0 annot-version=v1.0 ATGAGAGAGATTTTTAAAGCTTTTAGCAATATAGTAAATAAGTGTTTTATTAACGGTACAATCGTCACCATATGTTCATTTCATTGTTTTAAAAAAAAGA AAGAATCCTCTCTTTATAAACCGAGCGAAGTAAAATACAGACCGTATAGCAATGGCATAGTCAACATTGAGACTGCGTCGCTATATATATTGAATCCCGC CGGCCCCATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGG TGCCGATCGGAACACAGGTTAGCCAACGAGAGGGTGTGGCTAGAGACCTGCAAACTGTGTTCAACTCAACTTCCGCCGCGGCTTACCTGACCCGGTGTGT ATATTTCATTACCTTCGGAAGCGGAAGCATCGCAAACCAAGTCGAAAATCTCATCTTCTCCGACCCGTCGTACATCCAAACAGCTACAAGTGAATACGTT ACTTATGTGCAGTCTCTATACGCAATTGGAGCTCGCAAGTTCGGGGTCATAGGGCCACTGCAAATCGGGTGCAGTCCAGCTGGTCGATCCAGAAGTCCAA CTCGTCGCTGCAACGCCAGGTTGAATTCGATTGCGGCAGCTATCCCTCCCCGCATGGCAGTGGCTATGAGCATGCTTCGGGATACGAATCCTGGTATCGT TTATTCCGTCGCGAATACTTACAATGTAATCGCCGACATCACCAGCAGTCCAACACTATACGGCAAGTGTCGTCATTAA
AA sequence Show only first row Show all	>Lus10026646 pacid=23164339 polypeptide=Lus10026646 locus=Lus10026646.g ID=Lus10026646.BGIv1.0 annot-version=v1.0 MREIFKAFSNIVNKCFINGTIVTICSFHCFKKKKESSLYKPSEVKYRPYSNGIVNIETASLYILNPAGPIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVPIGTQVSQREGVARDLQTVFNSTSAAAYLTRCVYFITFGSGSIANQVENLIFSDPSYIQTATSEYV TYVQSLYAIGARKFGVIGPLQIGCSPAGRSRSPTRRCNARLNSIAAAIPPRMAVAMSMLRDTNPGIVYSVANTYNVIADITSSPTLYGKCRH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Lus10026646 [exp]	0	1

Compare expression of checked genes

Lus10026646 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.