Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G28780 154 / 2e-43 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G29670 146 / 2e-40 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G55050 145 / 4e-40 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G18430 141 / 1e-38 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G29660 141 / 1e-38 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G37690 135 / 2e-36 SGNH hydrolase-type esterase superfamily protein (.1) AT3G04290 134 / 4e-36 ATLTL1, LTL1 Li-tolerant lipase 1 (.1) AT1G33811 134 / 5e-36 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G45670 132 / 5e-35 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT2G19060 131 / 7e-35 SGNH hydrolase-type esterase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004668 [exp] 520 / 0 AT5G55050 184 / 6e-55 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10017903 [exp] 340 / 8e-118 AT4G28780 85 / 3e-19 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10011312 [exp] 279 / 6e-93 AT1G29670 88 / 7e-20 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10012135 [exp] 249 / 1e-81 AT1G29670 84 / 8e-19 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10023578 [exp] 243 / 8e-81 AT4G28780 84 / 7e-20 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10026644 [exp] 229 / 1e-72 AT4G28780 113 / 2e-28 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10026646 [exp] 214 / 4e-66 AT1G29670 72 / 1e-13 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10037113 [exp] 209 / 3e-64 AT3G04290 192 / 6e-58 Li-tolerant lipase 1 (.1) Lus10037112 [exp] 203 / 5e-62 AT5G55050 176 / 1e-51 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G180400 [exp] 189 / 1e-56 AT4G28780 200 / 4e-61 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.005G104900 [exp] 169 / 1e-48 AT5G55050 209 / 7e-64 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G024700 [exp] 154 / 2e-43 AT5G33370 549 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.011G089700 [exp] 154 / 2e-43 AT5G55050 375 / 3e-129 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.002G253400 [exp] 153 / 7e-43 AT4G28780 558 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G024600 [exp] 148 / 4e-41 AT5G33370 568 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.017G130100 [exp] 143 / 2e-39 AT5G37690 526 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1) Potri.019G024800 [exp] 143 / 5e-39 AT5G33370 544 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.011G076500 [exp] 139 / 9e-38 AT5G45670 533 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.013G051100 [exp] 137 / 3e-37 AT5G33370 563 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [flax] [poplar] SGNH_hydrolase PF00657 [flax] [poplar] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Lus10026647 pacid=23164231 polypeptide=Lus10026647 locus=Lus10026647.g ID=Lus10026647.BGIv1.0 annot-version=v1.0 ATGGCGACCAAACCAGTGTGGACATTAGTGACAAGTTTAGTTCTCGGTGTCTTGTGTCGGTGTTCGTCACAAGGAGATTTTAGCGGGCCGTGTGCTTTCT ACTTGGGAGGGGCTACCTTCGATGTCGGGACGAACAACTACTTGAACATGAGCACTGCGAGGGCCGACACCCCACCTAATGGGATCGATTTTCCCTCCGG GCCCAGTGGTCGGTTTAGCAACGGCTGGAATGTGGCTGACTATATCGCTATGAAGATGGGTTTGAACTTCAGTCCGCCGGCCTACCTCTCCTTAGTCGCC GGAGCCTCGGCCACCAACACTTCAGACCTCCAGAGTGTACTAAACAACGGGGGACTCAACTTTGCTTCCGGAGGCGATGGATTTTCCGACTTTGGCCGAA GGAATTATGGCCAGGTGGTGCCGATCGGGACGCAAGTCACCCAACTGGAGGGCGTTGCAAGAGACCTGCAAACTGTGTTCAATTCTACTGCCACGGCCGC TTACCTGAGCAACTGTGTGTACTATATCGACGTCGGAGGCAGCGACATAGTAGTGCAACTGGATAATCTCATTTTCACCGATCCCCCGTTCCTCAGTAGA CTTACAAGTGAATTCGTTAGCCTCGTACAGGCTCTATACGGTATTGGAGCACGGAAGTTCGGGGTCGTAGGACCGCAACAAATCGGGTGCAGTCCAATAG CTCGAGCCCGTAGCCCAACCGGGCGCTGCAGTCCCAGAGCGAATTCGATAGCGGAGGCTATCCCTTCCCGATTGGACGCAGCTATGAGCATGCTTAGAGT TACAAATCAGGATATTATTTATTCTGTCGCGAATTCTTATAATATAAATAGCGACCTCACCAACAGTCCAACACTATACGGTTTAAGGAACGTTACGGGT GCATGTTGTGGGAACGGAACGACGCTATGCGTATCGAATTCTACAGTGTGCGGGGACCGCGATCGGTACTTGTATTGGAATCCGGCTCAACTATCCCAAA GCGGTTCGAGATTGGTCGTCGAAGCATTTTTCAGTGAAAATTCGAGATACACGGACCCCATAAGCTTTACAGAGCTGATTAACTCACCGAACCCAATTGA ATGA
AA sequence Show only first row Show all	>Lus10026647 pacid=23164231 polypeptide=Lus10026647 locus=Lus10026647.g ID=Lus10026647.BGIv1.0 annot-version=v1.0 MATKPVWTLVTSLVLGVLCRCSSQGDFSGPCAFYLGGATFDVGTNNYLNMSTARADTPPNGIDFPSGPSGRFSNGWNVADYIAMKMGLNFSPPAYLSLVA GASATNTSDLQSVLNNGGLNFASGGDGFSDFGRRNYGQVVPIGTQVTQLEGVARDLQTVFNSTATAAYLSNCVYYIDVGGSDIVVQLDNLIFTDPPFLSR LTSEFVSLVQALYGIGARKFGVVGPQQIGCSPIARARSPTGRCSPRANSIAEAIPSRLDAAMSMLRVTNQDIIYSVANSYNINSDLTNSPTLYGLRNVTG ACCGNGTTLCVSNSTVCGDRDRYLYWNPAQLSQSGSRLVVEAFFSENSRYTDPISFTELINSPNPIE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G55050			GDSL-like Lipase/Acylhydrolase...		Lus10026647 [exp]	0	1

Compare expression of checked genes

Lus10026647 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.