Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69330 248 / 7e-79 RING/U-box superfamily protein (.1) AT3G29270 207 / 2e-63 RING/U-box superfamily protein (.1.2) AT1G74370 179 / 2e-52 RING/U-box superfamily protein (.1) AT3G50400 61 / 1e-09 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G08460 58 / 6e-09 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT2G23540 57 / 2e-08 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G18430 56 / 3e-08 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G42170 56 / 4e-08 SGNH hydrolase-type esterase superfamily protein (.1) AT5G55050 55 / 6e-08 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT4G28780 55 / 7e-08 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004666 [exp] 512 / 0 AT1G69330 272 / 1e-91 RING/U-box superfamily protein (.1) Lus10003473 [exp] 223 / 3e-69 AT3G29270 296 / 2e-101 RING/U-box superfamily protein (.1.2) Lus10015732 [exp] 223 / 5e-69 AT3G29270 296 / 2e-101 RING/U-box superfamily protein (.1.2) Lus10005220 [exp] 215 / 3e-66 AT3G29270 317 / 3e-109 RING/U-box superfamily protein (.1.2) Lus10030699 [exp] 213 / 3e-65 AT3G29270 310 / 5e-107 RING/U-box superfamily protein (.1.2) Lus10017904 [exp] 188 / 4e-55 AT2G23540 117 / 8e-30 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10026645 [exp] 140 / 8e-37 AT5G55050 154 / 2e-43 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10030409 [exp] 130 / 2e-33 AT5G55050 157 / 2e-44 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10030411 [exp] 129 / 1e-32 AT5G55050 158 / 1e-44 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G161100 [exp] 260 / 8e-84 AT1G69330 263 / 5e-88 RING/U-box superfamily protein (.1) Potri.017G090000 [exp] 216 / 2e-66 AT3G29270 281 / 2e-95 RING/U-box superfamily protein (.1.2) Potri.004G125400 [exp] 215 / 3e-66 AT3G29270 283 / 4e-96 RING/U-box superfamily protein (.1.2) Potri.012G067200 [exp] 199 / 4e-60 AT3G29270 270 / 3e-91 RING/U-box superfamily protein (.1.2) Potri.005G104900 [exp] 63 / 2e-10 AT5G55050 209 / 7e-64 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.004G180400 [exp] 58 / 7e-09 AT4G28780 200 / 4e-61 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.013G153000 [exp] 57 / 8e-09 AT2G30220 355 / 1e-121 GDSL-like Lipase/Acylhydrolase family protein (.1) Potri.008G104700 [exp] 56 / 2e-08 AT2G23540 280 / 1e-91 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G067600 [exp] 56 / 3e-08 AT1G71250 473 / 9e-168 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.002G253400 [exp] 56 / 3e-08 AT4G28780 558 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10026648 pacid=23164345 polypeptide=Lus10026648 locus=Lus10026648.g ID=Lus10026648.BGIv1.0 annot-version=v1.0 ATGATCGTCATCACTGTTCGGCTTCGGCCGTGGCTGTGTTCGTACAACTACTTGGACACCACGGAGAAGGCTAACCAGCTGTTCAACGGCATTGATTACC CTGGCTCCGTCCCCATCGGCAGATTCAGCAACGGTCGAGTTTTGATCGACGAAATCGCTACCGGCAGCGCCAACATGGCGTCGGCCGGAGGGGGAACTAT CAACTCGATACCGCCACTCGTAACCTTGCAAGCCTCCGGTGCCCTGCCCCGGGGTGTGTTGGCTACCGGCAGCGCCAACATGGCGTCGGCCGGAGGTGGA ACTATCAACTCGATACCTGGAGCACCGCCCTTGGGAGTGCAGTTGGCCCAGCTATTGACGGTCTTCGGAAACCTGACGGCTAGGCTAGGGCCACAGGCCG CGGCCAACTATTTGAACCAGAGTGTGCGTGTGGTCTCCCCCGTAAGCGCTGCCATTGTCGTGCAAGCACGGAATGCCAGCGCCGCCACAGACCAGGCCTT CGTCGCCAGGCTTGTGCTCGAAACCACTCCCCCACACTTCAATGTCGTGGCTGTGTTCGTAATCGGCGGCTTCTCGAGCGACGTTGGTACGAACAACTAC TTGAACACCACCCAGAAGGCTAACCAGCCGTTCAACGGCATTGATTTCCCTGGCTCTGTCCCCACTGGCAGATTCAGCAACGGCCGGGTTCTGATCGACG AAATCGGGGAGGGAATGAATCTTTGGGGGTTTGCTTCAAATGCTATAGCTAGCATTGGGCTCAAGAGGAGCTCGAACCCGAAAGAGACGATTCAGGATCC TCATTCGGAGTGTTCTGACGACGATGATGTGTGCTCGAATGCAAGCAAGGAGGAAGGATTGGAGTGTCCGATTTGTTGGGAGTCTTTCAACATTGTTGAG AATGTGCCTTATGTGTTGTGGTGTGGACATTCCCTTTGCCAGAACTGTGTTTTAGCTCTTCAGTGCACTGTGTGGCAGTTCCATGCTCAACATTTCAAGG TTCCTTTCCTCATCTCGTGTCCTTGGTGCCACGTGGTGTCGCTACGGGTGTTGTATAATCGGAGCTTGAGGTTCCCTCGCAAGAACTACTTTCTTCTGTG GATGGTGGAGAGGTTGAATGATGACCAGGCTGGGAAGGTTAACTCGTCGGCCTTGCCAGCTGCTTTTGATGATCAACCAGTTTGGCATTTGACAAATGAA GTTGGTAATGATCAAGCCACGACTCTTGATAACGAAGCAAGGAATGAGCAGAATCAAGGGTTGGACTTTCAAGGGGATGGTCATGGAGGTAGAGGAAGCA ATGCAGTGGGGAGACAGCATTTGCTATCGTTGCACAAGTCGCTCGACCTTTTCATCCGCTTCACTTCCAAGTTCCCTTTGGCCATTGTGTTGCTTCTGGT GGTGTTTTTCGCTGTTCCCATCAGTTCGGCCATATTGATCCTCTACTTTATAGTTACTGTTGTTTTCGCAATACCGTCTTGCTTGGTTTTGTACTTTGCA TACCCTACCTTGTCTAGGCTTGTTGCAGAAATAGTCTCTTGA
AA sequence Show only first row Show all	>Lus10026648 pacid=23164345 polypeptide=Lus10026648 locus=Lus10026648.g ID=Lus10026648.BGIv1.0 annot-version=v1.0 MIVITVRLRPWLCSYNYLDTTEKANQLFNGIDYPGSVPIGRFSNGRVLIDEIATGSANMASAGGGTINSIPPLVTLQASGALPRGVLATGSANMASAGGG TINSIPGAPPLGVQLAQLLTVFGNLTARLGPQAAANYLNQSVRVVSPVSAAIVVQARNASAATDQAFVARLVLETTPPHFNVVAVFVIGGFSSDVGTNNY LNTTQKANQPFNGIDFPGSVPTGRFSNGRVLIDEIGEGMNLWGFASNAIASIGLKRSSNPKETIQDPHSECSDDDDVCSNASKEEGLECPICWESFNIVE NVPYVLWCGHSLCQNCVLALQCTVWQFHAQHFKVPFLISCPWCHVVSLRVLYNRSLRFPRKNYFLLWMVERLNDDQAGKVNSSALPAAFDDQPVWHLTNE VGNDQATTLDNEARNEQNQGLDFQGDGHGGRGSNAVGRQHLLSLHKSLDLFIRFTSKFPLAIVLLLVVFFAVPISSAILILYFIVTVVFAIPSCLVLYFA YPTLSRLVAEIVS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G69330			RING/U-box superfamily protein...		Lus10026648 [exp]	0	1
AT3G05170			Phosphoglycerate mutase family...		Lus10029974 [exp]	2.0	0.7147
AT5G61510			GroES-like zinc-binding alcoho...		Lus10009018 [exp]	2.4	0.7199
AT4G29270			HAD superfamily, subfamily III...		Lus10043042 [exp]	10.1	0.7080
AT5G40510			Sucrase/ferredoxin-like family...		Lus10022274 [exp]	11.5	0.7315
AT4G35090		CAT2	catalase 2 (.1.2)		Lus10016017 [exp]	15.9	0.6591
AT1G19800		ABCI14, TGD1	ATP-binding cassette I14, trig...		Lus10020258 [exp]	20.8	0.6662
AT3G55440		CYTOTPI, ATCTIM...	CYTOSOLIC ISOFORM TRIOSE PHOSP...		Lus10004963 [exp]	23.7	0.7155
AT4G39080		VHA-A3	vacuolar proton ATPase A3 (.1)		Lus10017488 [exp]	26.5	0.5758
AT3G17090			Protein phosphatase 2C family ...		Lus10017061 [exp]	38.4	0.6166
AT5G08139			RING/U-box superfamily protein...		Lus10008874 [exp]	38.5	0.6273

Compare expression of checked genes

Lus10026648 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.