Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20540 226 / 7e-68 MEF21 mitochondrial editing factor 21 (.1) AT1G31430 224 / 7e-67 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT4G21065 223 / 2e-66 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT2G22410 224 / 4e-66 SLO1 SLOW GROWTH 1 (.1) AT2G02980 221 / 1e-65 OTP85 ORGANELLE TRANSCRIPT PROCESSING 85, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G37380 221 / 3e-65 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G08305 214 / 1e-63 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G50270 214 / 8e-63 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G06540 213 / 3e-62 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G48910 213 / 3e-62 LPA66 LOW PSII ACCUMULATION 66, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004663 [exp] 743 / 0 AT2G20540 325 / 5e-105 mitochondrial editing factor 21 (.1) Lus10007341 [exp] 233 / 3e-70 AT2G42920 610 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10004052 [exp] 230 / 9e-69 AT1G31430 684 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10002288 [exp] 230 / 1e-68 AT1G31430 689 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10040680 [exp] 229 / 2e-67 AT2G29760 926 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018223 [exp] 228 / 5e-67 AT2G29760 931 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010901 [exp] 220 / 1e-66 AT3G15930 360 / 2e-118 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10010909 [exp] 223 / 1e-65 AT5G66520 537 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10020918 [exp] 219 / 1e-64 AT2G29760 474 / 3e-159 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G202600 [exp] 248 / 3e-76 AT2G42920 660 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.010G168800 [exp] 245 / 1e-74 AT2G02980 860 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 85, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G044700 [exp] 245 / 2e-73 AT2G29760 1013 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G223900 [exp] 238 / 2e-72 AT5G56310 508 / 1e-176 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G088600 [exp] 238 / 2e-71 AT1G31430 690 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.008G106500 [exp] 236 / 4e-71 AT2G29760 422 / 4e-139 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G012600 [exp] 236 / 2e-70 AT2G29760 540 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G237000 [exp] 234 / 2e-70 AT5G66520 544 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.017G141200 [exp] 231 / 6e-70 AT5G66520 407 / 1e-135 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.007G050200 [exp] 233 / 7e-70 AT4G37380 817 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10026650 pacid=23164274 polypeptide=Lus10026650 locus=Lus10026650.g ID=Lus10026650.BGIv1.0 annot-version=v1.0 ATGACGATCCATCCTTCAACAAGATGCTTAAACCTTATGAAGAAATGCAAAACCTTCAAACAACTCCATCAAGCTCAAGCTCAAGCTCAATCAATCACCT GCGGCCTTGGCCAAAATCCTTTTACTCTCAGCAGAATCCTAGCTTTCTACGCCGACACCAGAACCGCCGTCGCCGGCGACCACGCTTGGAACCTCTTCCA AACCATTCACCGGCCCACAATTTGTATCTGCAACACCACGATCAAATCCCTACTCCTCAACGACGATGACGACAAACTCGCCAAAATTTTCAAAATCTAC TCCACCATCTGGCGGCAAGAACTCGTGAAATTGGGGATCGAATTCTTTACTGTTGTGGGGAACTCGTTGATTTCGATGTACTGTGGATTTGGGGATGTTG GTGGTGCTGCAGGTAAGGTGTTTGACAAAATGCCTCACCGGTGTGTTGTGTCGTGGACGTTGATGGTTTCGGGGTTTGCGAAAGGTGGAGAAGCTGAGAA TGCGAGGATGGTTTTCGACGAGGCTCCGAGGAAGGATGCAGGGCTGGAGATGATGCAGGTGGAACGAATTCGTCCTGATGAGGGGATCTTTTCGAGCGTT TTGGCTGCTTGTGCTCAGTTGGGAGCTTTGGATACTGGGATGTGGATTCATAGGATTCATAGGCACTTGATTAGTAGGAATGGAGATAGAATGGGAATCG GTACTTGTTTGAGTACTGCATTGGTCGATATGTACGTCAAATGCAGGAGCTTGGATTTCGCGAAGAAAGTTTTGGAGGAAATTCGGGATAGGGACGTTGT GTGTTGGAATGTGATGATTTCGGGGCTGGCGATGCACGGAGATGCTAAGAACGCGATTCGGTTGTTCTCCAAAATGGAGGAATCTGGGGTTAGACCGGAC GATATTACGTTCTTAACCCTTCTATCGGCTTGCAGCCATTTGAACATGGCATCGGAAGTGTTATGGATGCTGGACCGGATGTGTAATGTTTATAAAATCG AGCCGAAGAGCGAACATTTGGGATGCATCGTTGATCTACTAAGCAGGGAGGGTCTTCTTCGAGAAGCTGCATCGATAATCGTAAAGATGCAGATGAGTTC TTCAGAAGAAGCAATAGCGTGGAGGGCATTGCTGAATGCTTGCTGCAACCAAGGAGACGCAAAACTGGCCAAGATAGCTGCCGAGAGAGTTTTCGAGCTG GAGAGCCACAGCGGAGCTTACGCACTGCTCGCGAATCTGTACGCTGCTGCAGGGAATCACGACAAAACCAAGAGGATGAGGATAATGATGAGGAATCGAG GGGTGGAGAAAGTTCCCGGTTGCAGCTCGATCAAGATTGGTGGGTCGGTTCATGAGTTTGTAGCTGGAAGAGATTAA
AA sequence Show only first row Show all	>Lus10026650 pacid=23164274 polypeptide=Lus10026650 locus=Lus10026650.g ID=Lus10026650.BGIv1.0 annot-version=v1.0 MTIHPSTRCLNLMKKCKTFKQLHQAQAQAQSITCGLGQNPFTLSRILAFYADTRTAVAGDHAWNLFQTIHRPTICICNTTIKSLLLNDDDDKLAKIFKIY STIWRQELVKLGIEFFTVVGNSLISMYCGFGDVGGAAGKVFDKMPHRCVVSWTLMVSGFAKGGEAENARMVFDEAPRKDAGLEMMQVERIRPDEGIFSSV LAACAQLGALDTGMWIHRIHRHLISRNGDRMGIGTCLSTALVDMYVKCRSLDFAKKVLEEIRDRDVVCWNVMISGLAMHGDAKNAIRLFSKMEESGVRPD DITFLTLLSACSHLNMASEVLWMLDRMCNVYKIEPKSEHLGCIVDLLSREGLLREAASIIVKMQMSSSEEAIAWRALLNACCNQGDAKLAKIAAERVFEL ESHSGAYALLANLYAAAGNHDKTKRMRIMMRNRGVEKVPGCSSIKIGGSVHEFVAGRD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G37380			Tetratricopeptide repeat (TPR)...		Lus10026650 [exp]	0	1
AT5G58820			Subtilisin-like serine endopep...		Lus10007042 [exp]	1.7	0.7843
AT1G15940			Tudor/PWWP/MBT superfamily pro...		Lus10009948 [exp]	5.7	0.7809
AT1G15940			Tudor/PWWP/MBT superfamily pro...		Lus10030133 [exp]	6.3	0.7986
AT1G14790		ATRDRP1, RDR1	RNA-dependent RNA polymerase 1...		Lus10034391 [exp]	6.8	0.8009
AT1G13570			F-box/RNI-like superfamily pro...		Lus10004851 [exp]	15.8	0.7558
AT1G71150			unknown protein		Lus10007946 [exp]	19.7	0.7727
AT5G57910			unknown protein		Lus10035808 [exp]	19.8	0.7579
AT2G40920			F-box and associated interacti...		Lus10001579 [exp]	22.1	0.6944
AT3G47600	MYB	ATMYB94, AtMYBC...	myb domain protein 94 (.1)		Lus10030677 [exp]	29.0	0.6804
AT3G24000			Tetratricopeptide repeat (TPR)...		Lus10002561 [exp]	30.9	0.7129

Compare expression of checked genes

Lus10026650 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.