Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G61240 522 / 0 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2) AT1G13910 454 / 1e-161 Leucine-rich repeat (LRR) family protein (.1) AT3G11080 138 / 5e-36 AtRLP35 receptor like protein 35 (.1) AT1G35710 137 / 1e-35 Protein kinase family protein with leucine-rich repeat domain (.1) AT4G08850 135 / 4e-35 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) AT4G20140 135 / 5e-35 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT4G36180 133 / 3e-34 Leucine-rich receptor-like protein kinase family protein (.1) AT1G17230 130 / 4e-33 Leucine-rich receptor-like protein kinase family protein (.1) AT2G25790 129 / 8e-33 Leucine-rich receptor-like protein kinase family protein (.1) AT5G07180 129 / 9e-33 ERL2 ERECTA-like 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004662 [exp] 582 / 0 AT5G61240 543 / 0.0 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2) Lus10037108 [exp] 574 / 0 AT5G61240 550 / 0.0 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2) Lus10036961 [exp] 513 / 0 AT5G61240 488 / 1e-175 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2) Lus10008712 [exp] 144 / 8e-38 AT4G08850 1009 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10020935 [exp] 142 / 3e-37 AT4G08850 1011 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10027688 [exp] 134 / 2e-34 AT4G20140 707 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10038488 [exp] 130 / 2e-33 AT5G46330 726 / 0.0 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) Lus10038381 [exp] 128 / 2e-33 AT4G20270 457 / 5e-152 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1) Lus10036242 [exp] 130 / 3e-33 AT4G20270 1248 / 0.0 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G093400 [exp] 528 / 0 AT5G61240 513 / 0.0 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2) Potri.010G160700 [exp] 526 / 0 AT5G61240 517 / 0.0 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2) Potri.012G124100 [exp] 152 / 6e-41 AT4G08850 711 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.012G124300 [exp] 145 / 2e-38 AT4G08850 727 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.006G014232 [exp] 144 / 6e-38 AT1G53440 504 / 5e-161 Leucine-rich repeat transmembrane protein kinase (.1) Potri.019G060400 [exp] 139 / 3e-36 AT4G08850 728 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.002G008375 [exp] 139 / 3e-36 AT4G08850 557 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.018G045500 [exp] 139 / 4e-36 AT2G25790 925 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.006G237400 [exp] 139 / 4e-36 AT2G25790 885 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.006G261900 [exp] 137 / 1e-35 AT4G08850 695 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10026651 pacid=23164371 polypeptide=Lus10026651 locus=Lus10026651.g ID=Lus10026651.BGIv1.0 annot-version=v1.0 ATGGCGCGTCGATCGCGACCCACCAATCTCCAGTTCCTCTTCCTAATCCCGCTCTTCTTCTTCTTCTTCAGCACTCCCGCCCTCTGCAAAACCCTCAAAC GCGACGTGAAGGCGCTGAACGAGATCAAGTCGTCGCTGGGATGGAGAGTCGTGTACGCCTGGGTCGGCGATGACCCTTGCGGCGGCGACGGCCTCCAGCC TTGGTCCGGCGTCACCTGCTCCACCCAAGGCGATTACCGCGTCGTCACCGAATTGGAAGTGTATGCAGTGTCGATCGTTGGTCCGTTTCCTACCGCCGTC ACCAATCTCTTGGATCTTACCAGATTGGATTTCCACAACAACAAGCTGACAGGGCCGATCCCTCCACAGATTGGAAGATTGAAGCGTCTCAGGATTCTGA ACTTCCGGTGGAACAAGTTGCAAGATGCAATTCCACCCGAGATTGGCGAACTCAAGAGTCTGACCCATCTGTACTTGAGCTTCAACAATTTCAAAGGAGA GATTCCAAGGGAGCTAGCGAATCTTCCTGAGCTCCGATATCTCTACTTGCAAGAGAATAGATTCTCCGGGAGAGTGCCTGCAGAACTGGGAACACTACAG AATCTTCGTCACTTAGATGTTGGCAACAACCATTTAGTTGGCACGATAAGGGAACTCATCCATATCGAGGGCTGCTTCCCTGCCCTCCGCAACCTCTACC TGAACAACAATTATCTGACTGGAGGAGTCCCTGCACAGCTTGCTAACTTGACGAACTTGGAAATCTTGCACCTATCCTATAACAAGATGACCGGGTTTAT ACCAGTCCAACTCGCTCATATCCCGAAATTGACCTACCTATACCTGGACCACAACCAATTCACGGGACGAATTCCCGAATCGTTCTATAAACATCCGTTC TTGAAAGAAATGTACATCGAAGGAAGCTCGTTCAAATCCGGTGTGAACCCGATTGGCATCCACAACGTCTTCGAAGTGTCAGATGCAGATTTCGTAGTTT AA
AA sequence Show only first row Show all	>Lus10026651 pacid=23164371 polypeptide=Lus10026651 locus=Lus10026651.g ID=Lus10026651.BGIv1.0 annot-version=v1.0 MARRSRPTNLQFLFLIPLFFFFFSTPALCKTLKRDVKALNEIKSSLGWRVVYAWVGDDPCGGDGLQPWSGVTCSTQGDYRVVTELEVYAVSIVGPFPTAV TNLLDLTRLDFHNNKLTGPIPPQIGRLKRLRILNFRWNKLQDAIPPEIGELKSLTHLYLSFNNFKGEIPRELANLPELRYLYLQENRFSGRVPAELGTLQ NLRHLDVGNNHLVGTIRELIHIEGCFPALRNLYLNNNYLTGGVPAQLANLTNLEILHLSYNKMTGFIPVQLAHIPKLTYLYLDHNQFTGRIPESFYKHPF LKEMYIEGSSFKSGVNPIGIHNVFEVSDADFVV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G61240			Leucine-rich repeat (LRR) fami...		Lus10026651 [exp]	0	1
AT4G39220		ATRER1A	Rer1 family protein (.1)		Lus10041765 [exp]	2.4	0.8313
AT1G12840		ATVHA-C, DET3	DE-ETIOLATED 3, ARABIDOPSIS TH...		Lus10035159 [exp]	2.8	0.8360
AT2G47470		ATPDI11, ATPDIL...	UNFERTILIZED EMBRYO SAC 5, MAT...		Lus10020691 [exp]	4.5	0.8233
AT5G26667		PYR6	P-loop containing nucleoside t...		Lus10031611 [exp]	7.9	0.8318
AT3G10300			Calcium-binding EF-hand family...		Lus10042037 [exp]	10.5	0.8088
AT3G49720			unknown protein		Lus10039648 [exp]	11.5	0.8142
AT4G37250			Leucine-rich repeat protein ki...		Lus10030333 [exp]	13.7	0.7897
AT5G42660			Protein of unknown function (D...		Lus10032311 [exp]	14.0	0.8150
AT2G39290		PGP1, PGS1, PGP...	phosphatidylglycerolphosphate ...		Lus10023471 [exp]	14.7	0.7896
AT5G62690		TUB2	tubulin beta chain 2 (.1)		Lus10002000 [exp]	15.4	0.8116

Compare expression of checked genes

Lus10026651 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.