Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13900 833 / 0 Purple acid phosphatases superfamily protein (.1) AT2G03450 820 / 0 PAP9, ATPAP9 purple acid phosphatase 9 (.1) AT5G50400 234 / 4e-68 ATPAP27, PAP27 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) AT1G13750 231 / 4e-67 Purple acid phosphatases superfamily protein (.1) AT4G24890 218 / 3e-62 ATPAP24, PAP24 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 24, purple acid phosphatase 24 (.1) AT3G52780 130 / 3e-32 ATPAP20, PAP20 Purple acid phosphatases superfamily protein (.1.2) AT3G52820 115 / 2e-27 ATPAP22, PAP22 purple acid phosphatase 22 (.1) AT3G20500 114 / 9e-27 ATPAP18, PAP18 purple acid phosphatase 18 (.1) AT3G52810 110 / 2e-25 ATPAP21, PAP21 purple acid phosphatase 21 (.1) AT4G13700 110 / 2e-25 ATPAP23, PAP23 purple acid phosphatase 23 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004661 [exp] 1176 / 0 AT1G13900 860 / 0.0 Purple acid phosphatases superfamily protein (.1) Lus10037091 [exp] 940 / 0 AT1G13900 899 / 0.0 Purple acid phosphatases superfamily protein (.1) Lus10036894 [exp] 272 / 1e-87 AT1G13900 266 / 1e-85 Purple acid phosphatases superfamily protein (.1) Lus10039565 [exp] 234 / 3e-68 AT5G50400 362 / 6e-117 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Lus10024179 [exp] 226 / 5e-65 AT5G50400 331 / 3e-105 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Lus10019771 [exp] 212 / 4e-60 AT5G50400 317 / 4e-100 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Lus10037079 [exp] 201 / 6e-56 AT1G13750 928 / 0.0 Purple acid phosphatases superfamily protein (.1) Lus10016356 [exp] 200 / 9e-56 AT4G24890 332 / 7e-106 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 24, purple acid phosphatase 24 (.1) Lus10036904 [exp] 199 / 2e-55 AT1G13750 928 / 0.0 Purple acid phosphatases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G160500 [exp] 890 / 0 AT1G13900 903 / 0.0 Purple acid phosphatases superfamily protein (.1) Potri.003G202200 [exp] 233 / 9e-68 AT5G50400 359 / 8e-116 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Potri.001G023400 [exp] 217 / 7e-62 AT5G50400 345 / 1e-110 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Potri.010G158250 [exp] 213 / 2e-60 AT1G13750 967 / 0.0 Purple acid phosphatases superfamily protein (.1) Potri.015G095900 [exp] 209 / 5e-59 AT5G50400 838 / 0.0 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Potri.010G158400 [exp] 205 / 1e-57 AT1G13750 962 / 0.0 Purple acid phosphatases superfamily protein (.1) Potri.008G096000 [exp] 204 / 2e-57 AT1G13750 927 / 0.0 Purple acid phosphatases superfamily protein (.1) Potri.012G097400 [exp] 204 / 4e-57 AT5G50400 947 / 0.0 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Potri.011G138200 [exp] 115 / 2e-27 AT3G20500 696 / 0.0 purple acid phosphatase 18 (.1) Potri.001G423700 [exp] 110 / 9e-26 AT3G20500 701 / 0.0 purple acid phosphatase 18 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0163 [flax] [poplar] Calcineurin PF00149 [flax] [poplar] Metallophos Calcineurin-like phosphoesterase
Representative CDS sequence Show only first row Show all	>Lus10026652 pacid=23164264 polypeptide=Lus10026652 locus=Lus10026652.g ID=Lus10026652.BGIv1.0 annot-version=v1.0 ATGAATGCGACGGAAGTCTTTCTCACATTCATCATCATCCTCCTCGCCGCTAGCATCGTCGTCGCACTCCCCAAACCAACTCTCACCGTCTCTCCCACCT TGCTCAACCGCTCCGGCGACTCCGTCACAGTCACCTGGTCCAACGTCCCCACCCCGTCAAGCCTCGACTGGGTCGGAATCTACTCCCCGCCGGACTCCCG CGCTGACCACTTCATCGGGTACAAATTCCTCTCATCGGATCCGGGTTGGGAATCGGGGTCGGGCTCCCTATCGATCCCGATCACGAACCTGAGATCTAAC TTCACGTTCCGGATCTTCCGGTGGACGAAAGACGAGATCAACCAGAAGCGCCACGACCACGATCGGAACCCGATCCCCGCGTCGAAGCATCTGCTCGCGG AGTCGAGTCACGTCGGGTTCGGGTCCGGAATGCCGGAGCAGATCCACTTGGCGTTTACGGATGAGGAGGATGAGATGAGGGTTATGTTCGTGGCTGGAGA TGGGGACGAGAGGAAAGTTAGGTGGCGGCGGGAGGAAGAAGAGGAGGAGGATGGCGGTGGAGGGTGGGATGACATGGCGGCGGCGCGTGTGGTTCGGTAT GAGAGAGAGGATATGTGTGATTCGCCGGCGAATAGCTCGGTTGGGTGGAGGGATCCTGGGTGGGTTCATGATGCGGTGATGAAAGGTTTGCAGAAAGGGT TGAGATACTATTATCAGGTTGGAAGTGACTCAAAGGGATGGAGTGCTAAACAAACCTTTGTATCCAGAAACTCAGATGCCAACGAGACGATAGCCTTCCT CTTCGGCGACATGGGAACATCAGCACCGTACACGACATTCGTTCGCACACAGACCGAAAGCATCTCGACCGTGAAATGGATCCTCCGAGACATGAAACAA CTCGGCGACAAGCCTGCATTCGTCTCTCACATAGGCGACATCAGCTACGCAAATGGCTACTCATGGATATGGGACCATTTCTTCACTCAGATCGAGCCAA TCGCTTCGAGGCTTCCTTACCATGTTTGCATTGGGAACCACGAGTACGACTGGCCTGCTCAGCCGTGGAAGCCAGATTGGGCCTATGCGTACGGGACTGA TGGAGGCGGGGAATGTGGAGTTCCGTACAGCTCGAAATTCAACATGCCTGGTAACTCCTCTGAACCGACCGGAACTAAAGCACCAGCTACTAGGAACCTT TATTACTCGTTTGATGTCGGTTCGGTTCATTTTGTGTACATGTCGACCGAGACAAACTTCCTTATTGGGAGTCGACAGTACGAGTTCCTGAAGAAGGATC TCGAGTCGGTCAACAGGAGTAAGACTCCGTTCGTCGTGTTCCAGGGGCATCGGCCTATGTACACAACCAGCAAGTTGGATCGAGATGCGCCGATGAGGCA GAAACTTCAAGAGAATTTGGAGCCTTTACTTGTGAGCAACAATGTTACTACTGCTCTTTGGGGCCATGTCCATAGTTATGAGAGGTTTTGTCCTATGAAC AATTTTCAGTGTAGTGGGAAGAACAAGACATGGAAAGGGTTTCCTGTTCATGTTGTGATTGGAATGGCTGGACAGGATTGGCAGTCTGTTTGGGAACCTA GACCGGATCACCCCGATATGCCGGTTTTTCCTCAGCCGGAGATTTCCATGTATCGAGGCGGCGAGTTTGGGTACACGAGGCTGCTCGCTACGAGGGAGAA GCTTACATTCTCGTACGTTGGAAACCACGATGGAACGGTGCATGACATGGTGGAGTTTCTTGCGTCGGGTGAAGTAGTTGGTGGAGAAAACGAAGCGGAA ACTCGAGCTGATGATGATGATAATGATTCGAAGTTTTCGAGCTATGTCAAGGGCGGAAGTATTCTGTTGCTCGGAGCTCTGTTAGGGTACCTCGTTGGAT TCGTTTCGCATGGCAGGAAGCGGAATCTTGCACCGAAAAAAGGGGAGTGGACTGCAGTGAAGAGCGAGGAGACATGA
AA sequence Show only first row Show all	>Lus10026652 pacid=23164264 polypeptide=Lus10026652 locus=Lus10026652.g ID=Lus10026652.BGIv1.0 annot-version=v1.0 MNATEVFLTFIIILLAASIVVALPKPTLTVSPTLLNRSGDSVTVTWSNVPTPSSLDWVGIYSPPDSRADHFIGYKFLSSDPGWESGSGSLSIPITNLRSN FTFRIFRWTKDEINQKRHDHDRNPIPASKHLLAESSHVGFGSGMPEQIHLAFTDEEDEMRVMFVAGDGDERKVRWRREEEEEEDGGGGWDDMAAARVVRY EREDMCDSPANSSVGWRDPGWVHDAVMKGLQKGLRYYYQVGSDSKGWSAKQTFVSRNSDANETIAFLFGDMGTSAPYTTFVRTQTESISTVKWILRDMKQ LGDKPAFVSHIGDISYANGYSWIWDHFFTQIEPIASRLPYHVCIGNHEYDWPAQPWKPDWAYAYGTDGGGECGVPYSSKFNMPGNSSEPTGTKAPATRNL YYSFDVGSVHFVYMSTETNFLIGSRQYEFLKKDLESVNRSKTPFVVFQGHRPMYTTSKLDRDAPMRQKLQENLEPLLVSNNVTTALWGHVHSYERFCPMN NFQCSGKNKTWKGFPVHVVIGMAGQDWQSVWEPRPDHPDMPVFPQPEISMYRGGEFGYTRLLATREKLTFSYVGNHDGTVHDMVEFLASGEVVGGENEAE TRADDDDNDSKFSSYVKGGSILLLGALLGYLVGFVSHGRKRNLAPKKGEWTAVKSEET

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G13900			Purple acid phosphatases super...		Lus10026652 [exp]	0	1
AT5G03690			Aldolase superfamily protein (...		Lus10035571 [exp]	1.0	0.9558
AT5G67540			Arabinanase/levansucrase/inver...		Lus10019280 [exp]	1.4	0.9394
AT5G49720		TSD1, IRX2, DEC...	TUMOROUS SHOOT DEVELOPMENT 1, ...		Lus10012162 [exp]	4.9	0.9315
AT1G04360			RING/U-box superfamily protein...		Lus10021197 [exp]	8.5	0.9251
AT3G06035			Glycoprotein membrane precurso...		Lus10034054 [exp]	9.0	0.9227
AT3G19460			Reticulon family protein (.1.2...		Lus10002815 [exp]	11.7	0.9115
AT5G07740			actin binding (.1)		Lus10017556 [exp]	11.7	0.8918
AT1G29470			S-adenosyl-L-methionine-depend...		Lus10018954 [exp]	12.0	0.9029
AT2G38360		PRA1.B4	prenylated RAB acceptor 1.B4 (...		Lus10014234 [exp]	13.7	0.9272
AT1G19940		ATGH9B5	glycosyl hydrolase 9B5 (.1)		Lus10033156 [exp]	14.3	0.9293

Compare expression of checked genes

Lus10026652 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.