Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13890 185 / 7e-59 ATSNAP30, SNAP30 soluble N-ethylmaleimide-sensitive factor adaptor protein 30 (.1) AT5G61210 155 / 7e-47 SNP33, ATSNAP33B, SNAP33 soluble N-ethylmaleimide-sensitive factor adaptor protein 33 (.1) AT5G07880 117 / 9e-33 ATSNAP29, SNAP29 ARABIDOPSIS THALIANA SYNAPTOSOMAL-ASSOCIATED PROTEIN SNAP25-LIKE 29, synaptosomal-associated protein SNAP25-like 29 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004660 [exp] 276 / 1e-94 AT1G13890 349 / 4e-122 soluble N-ethylmaleimide-sensitive factor adaptor protein 30 (.1) Lus10036893 [exp] 265 / 5e-90 AT1G13890 335 / 2e-116 soluble N-ethylmaleimide-sensitive factor adaptor protein 30 (.1) Lus10037092 [exp] 262 / 4e-89 AT1G13890 327 / 1e-113 soluble N-ethylmaleimide-sensitive factor adaptor protein 30 (.1) Lus10034705 [exp] 157 / 1e-47 AT5G61210 350 / 1e-121 soluble N-ethylmaleimide-sensitive factor adaptor protein 33 (.1) Lus10003466 [exp] 157 / 3e-47 AT5G61210 379 / 1e-132 soluble N-ethylmaleimide-sensitive factor adaptor protein 33 (.1) Lus10015738 [exp] 156 / 5e-47 AT5G61210 381 / 1e-133 soluble N-ethylmaleimide-sensitive factor adaptor protein 33 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G093800 [exp] 172 / 8e-54 AT1G13890 337 / 4e-117 soluble N-ethylmaleimide-sensitive factor adaptor protein 30 (.1) Potri.010G160350 [exp] 172 / 1e-53 AT1G13890 266 / 2e-89 soluble N-ethylmaleimide-sensitive factor adaptor protein 30 (.1) Potri.015G049000 [exp] 162 / 2e-49 AT5G61210 403 / 3e-142 soluble N-ethylmaleimide-sensitive factor adaptor protein 33 (.1) Potri.012G066700 [exp] 148 / 4e-44 AT5G61210 360 / 3e-125 soluble N-ethylmaleimide-sensitive factor adaptor protein 33 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05739 [flax] [poplar] SNARE SNARE domain
Representative CDS sequence Show only first row Show all	>Lus10026653 pacid=23164279 polypeptide=Lus10026653 locus=Lus10026653.g ID=Lus10026653.BGIv1.0 annot-version=v1.0 ATGGGCCCGGCCAAGAAGCCGTCGGCGGCGGAGAAGAAGAAGTACGAGAACGGGTTCAAGGACTCCGGCGGGCTGGAGGGCTACGCCGTGTATAAGGCGG AGGAGACTACGAATACGGTGAATAATTGTTTGAGGATTGCTGAGGATATTAAGGGGGACGCTTCGAAGACGCTGGATATGGTGTTGTCAAATCCGCTCCC ACAGAAAACCAAGGAGATCAATGGCCCTGTGATCACAGAAGACAAAACATCAAGGAAGAATGCAAACCACAGAACACAAAGAGAGAAGCTTGGGATAGGA AACAAACCAGGAGCTAAATCAGCACCTGTAACTCCTCCCAATGAGCCCAGGAATGCAATGCAGAAAGTCGAGATGGAGAAGGCGAAGCAAGATGATGGAT TATCAGACTTGAGTGACATCTTGGGAGATTTGAAAGGCATGGCTGTTGACATGGGCACTGAACTTGACAGGCAAACCAAAGCATTGGATCATCTCGATGG CGACATCGATGAGCTCAACTCTAGAGTCAAAGGGGCCAACCAAAGTGCCCGCCATTTGCTTTCGAAATGA
AA sequence Show only first row Show all	>Lus10026653 pacid=23164279 polypeptide=Lus10026653 locus=Lus10026653.g ID=Lus10026653.BGIv1.0 annot-version=v1.0 MGPAKKPSAAEKKKYENGFKDSGGLEGYAVYKAEETTNTVNNCLRIAEDIKGDASKTLDMVLSNPLPQKTKEINGPVITEDKTSRKNANHRTQREKLGIG NKPGAKSAPVTPPNEPRNAMQKVEMEKAKQDDGLSDLSDILGDLKGMAVDMGTELDRQTKALDHLDGDIDELNSRVKGANQSARHLLSK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G13890		ATSNAP30, SNAP3...	soluble N-ethylmaleimide-sensi...		Lus10026653 [exp]	0	1
AT3G54070			Ankyrin repeat family protein ...		Lus10038357 [exp]	1.0	0.9440
					Lus10007802 [exp]	4.0	0.9300
AT5G05570			transducin family protein / WD...		Lus10001254 [exp]	4.2	0.9202
AT3G48560		TZP5, IMR1, ALS...	TRIAZOLOPYRIMIDINE RESISTANT 5...		Lus10032037 [exp]	4.9	0.9149
AT2G22560			Kinase interacting (KIP1-like)...		Lus10002655 [exp]	5.3	0.8900
AT5G24318			O-Glycosyl hydrolases family 1...		Lus10008865 [exp]	8.1	0.8843
AT3G23770			O-Glycosyl hydrolases family 1...		Lus10023226 [exp]	10.0	0.9122
AT4G12310		CYP706A5	"cytochrome P450, family 706, ...		Lus10024580 [exp]	11.3	0.8887
AT3G49180		RID3	ROOT INITIATION DEFECTIVE 3, T...		Lus10035930 [exp]	11.6	0.8156
AT2G34930			disease resistance family prot...		Lus10001035 [exp]	12.4	0.8883

Compare expression of checked genes

Lus10026653 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.