Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G26610 146 / 4e-39 C2H2ZnF C2H2-like zinc finger protein (.1) AT1G26590 100 / 4e-23 C2H2ZnF C2H2-like zinc finger protein (.1) AT3G60580 70 / 4e-13 C2H2ZnF C2H2-like zinc finger protein (.1) AT1G02030 69 / 5e-13 C2H2ZnF C2H2-like zinc finger protein (.1) AT2G45120 69 / 1e-12 C2H2ZnF C2H2-like zinc finger protein (.1) AT2G28200 47 / 1e-05 C2H2ZnF C2H2-type zinc finger family protein (.1) AT1G02040 46 / 2e-05 C2H2ZnF C2H2-type zinc finger family protein (.1) AT2G17180 46 / 3e-05 C2H2ZnF DAZ1 DUO1-ACTIVATED ZINC FINGER 1, C2H2-like zinc finger protein (.1) AT3G19580 45 / 3e-05 C2H2ZnF AZF2 zinc-finger protein 2 (.1.2) AT5G43170 42 / 0.0002 C2H2ZnF AZF3 zinc-finger protein 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004659 [exp] 700 / 0 AT1G26610 219 / 1e-66 C2H2-like zinc finger protein (.1) Lus10037095 [exp] 289 / 3e-93 AT1G26610 229 / 6e-70 C2H2-like zinc finger protein (.1) Lus10036889 [exp] 179 / 4e-53 AT1G26610 151 / 9e-43 C2H2-like zinc finger protein (.1) Lus10036890 [exp] 97 / 1e-23 AT1G26610 82 / 5e-19 C2H2-like zinc finger protein (.1) Lus10021637 [exp] 75 / 3e-14 AT1G02030 99 / 8e-23 C2H2-like zinc finger protein (.1) Lus10000679 [exp] 74 / 1e-13 AT2G45120 91 / 3e-20 C2H2-like zinc finger protein (.1) Lus10015740 [exp] 71 / 6e-13 AT1G02030 104 / 3e-25 C2H2-like zinc finger protein (.1) Lus10003463 [exp] 69 / 2e-12 AT1G26610 112 / 2e-28 C2H2-like zinc finger protein (.1) Lus10009278 [exp] 64 / 3e-11 AT2G45120 161 / 2e-48 C2H2-like zinc finger protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G159600 [exp] 210 / 1e-62 AT1G26610 298 / 6e-96 C2H2-like zinc finger protein (.1) Potri.008G094500 [exp] 200 / 2e-58 AT1G26610 223 / 3e-67 C2H2-like zinc finger protein (.1) Potri.001G157700 [exp] 72 / 1e-13 AT3G60580 159 / 2e-46 C2H2-like zinc finger protein (.1) Potri.003G077200 [exp] 70 / 5e-13 AT3G60580 151 / 2e-43 C2H2-like zinc finger protein (.1) Potri.014G066100 [exp] 70 / 6e-13 AT3G60580 176 / 1e-52 C2H2-like zinc finger protein (.1) Potri.002G143800 [exp] 69 / 2e-12 AT3G60580 199 / 1e-61 C2H2-like zinc finger protein (.1) Potri.004G205300 [exp] 57 / 6e-09 AT4G35280 236 / 2e-76 DUO1-ACTIVATED ZINC FINGER 2, C2H2-like zinc finger protein (.1) Potri.017G091800 [exp] 57 / 2e-08 AT5G67450 77 / 9e-16 zinc-finger protein 1 (.1) Potri.004G118100 [exp] 55 / 5e-08 AT3G49930 80 / 9e-17 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.001G125900 [exp] 53 / 1e-07 AT3G60580 98 / 1e-23 C2H2-like zinc finger protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10026654 pacid=23164406 polypeptide=Lus10026654 locus=Lus10026654.g ID=Lus10026654.BGIv1.0 annot-version=v1.0 ATGGAGACGAATCAGAAGAAGAAGTTCGTATGCAAGTTCTGCAACAAGAGGTATCCGTGTGGGAAGTCATTGGGTGGACACATAAGGATCCATCAGAATG GGAATTACTCATCTTCAGCTGATCATCACTATTTGCCTCCTGAAGATGATCATCATCACAAGAAGGATTCTTCATCAGCTGATGGATACATTCTGAGGGA GCATCCGAAGAAGACTCGGAGGTTCGAGACGAATTTGGCAGCAAACAACAGCAACAATCCTACCAATGGTAATCTGATCCAAGTATGTAAAGAATGTGGC AAAGGTTTCCAGTCTTTGAAAGCACTGTGTGGACATATGGCTTGCCATTCTAGGAACTACAGCTTCGATGAAGATCGATCGGATGATACGAGTGAGAAGC TGATGATGGAGGAGGATTTGGTACTGATGGATGATCAGAATTCTGATACTGAGACATCGGCTGCTCCGAGTAAAAGGAGGAGATCCAAGAGGATGATGAG GTATAAGAACATTGGTGTTACTAATGTTCATTCTTCTTCTGCTTCGATTGCTTCGGATCTGGAGCAAGATAATCAGGAAGAGGTGGCTTTGTGTTTGATG ATGCTGTCAAAGGATTCTAGTCTTAAAGGTTGTAACTTGAACTTTGTTGCTGCTGATTCTTCTGATAACAACTCTGTGGTGACCAAGATGAGAATCAAGG TGAAGAAGAATAATGAGAAAAACGACAAGAACGGTTCGAGTTGCTACGATGACGAAGAAAACAGCTTCATGGAGATGAAAGTAGCTAGGAAGAAGCACCA GGTGGTGATTTCTTCTGATAATGATCAAAATTCTGATTCTGGATACTTCAATTATGGTCCTAAGAAAGTTGAAGAGCCAGAGGTGGTTTCTTTCCATGAA AAGAAACCAGCAAAACCTGTTCTTGCTAGTAGCAAAACCAACAACAACTATCACAAGAGGGCTAGGGAGAGCAGTGACAATATCTACGAGAGTGGCGAGA ACAGCTTCGAGACCGAAACAACAAAAACCGTTACGAAGAAGGTGAACAATGGGAAGAACCACCACCCTCCAGCAAAGAGCAATAACAAGTTGTCAGCAAA TGCAGCAGCAGCTAAAAAGGCCAAAGTTCATGAGTGTCCATTTTGTTCCAAGGTGTTTAGATCAGGCCAAGCTCTGGGAGGTCACAAGAGGTCCCATTTT GTTGGAGGAGCTGAGGATACTACTGTGGTGCTTAAGCAACAAGTAGCTGAAATACCAATGATTGATCTCAACCTTCCAGCTCCTGTGGATCATGAAGAAC AAGCAACTGGCTTTGTCACCTGGTAA
AA sequence Show only first row Show all	>Lus10026654 pacid=23164406 polypeptide=Lus10026654 locus=Lus10026654.g ID=Lus10026654.BGIv1.0 annot-version=v1.0 METNQKKKFVCKFCNKRYPCGKSLGGHIRIHQNGNYSSSADHHYLPPEDDHHHKKDSSSADGYILREHPKKTRRFETNLAANNSNNPTNGNLIQVCKECG KGFQSLKALCGHMACHSRNYSFDEDRSDDTSEKLMMEEDLVLMDDQNSDTETSAAPSKRRRSKRMMRYKNIGVTNVHSSSASIASDLEQDNQEEVALCLM MLSKDSSLKGCNLNFVAADSSDNNSVVTKMRIKVKKNNEKNDKNGSSCYDDEENSFMEMKVARKKHQVVISSDNDQNSDSGYFNYGPKKVEEPEVVSFHE KKPAKPVLASSKTNNNYHKRARESSDNIYESGENSFETETTKTVTKKVNNGKNHHPPAKSNNKLSANAAAAKKAKVHECPFCSKVFRSGQALGGHKRSHF VGGAEDTTVVLKQQVAEIPMIDLNLPAPVDHEEQATGFVTW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G26610	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10026654 [exp]	0	1
AT2G40320		TBL33	TRICHOME BIREFRINGENCE-LIKE 33...		Lus10040953 [exp]	4.7	0.9692
AT5G44030		IRX5, NWS2, CES...	IRREGULAR XYLEM 5, cellulose s...		Lus10008226 [exp]	11.2	0.9559
AT1G19940		ATGH9B5	glycosyl hydrolase 9B5 (.1)		Lus10034515 [exp]	11.4	0.9522
AT3G61750			Cytochrome b561/ferric reducta...		Lus10010120 [exp]	13.2	0.9548
AT1G18200		AtRABA6b	RAB GTPase homolog A6B (.1)		Lus10018013 [exp]	16.2	0.9493
AT2G37090		IRX9	IRREGULAR XYLEM 9, Nucleotide-...		Lus10026487 [exp]	17.9	0.9536
AT5G67230		IRX14-L, I14H	IRREGULAR XYLEM 14-LIKE, IRREG...		Lus10019325 [exp]	20.1	0.9498
AT1G67510			Leucine-rich repeat protein ki...		Lus10015799 [exp]	22.4	0.9482
AT2G28315			Nucleotide/sugar transporter f...		Lus10041314 [exp]	22.8	0.9500
AT3G55950		CCR3, ATCRR3	CRINKLY4 related 3 (.1)		Lus10040663 [exp]	24.0	0.9420

Compare expression of checked genes

Lus10026654 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.