Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G26580 215 / 4e-64 unknown protein AT2G03470 189 / 1e-54 MYB ELM2 domain-containing protein (.1.2) AT1G13880 185 / 2e-53 ELM2 domain-containing protein (.1) AT4G11400 122 / 1e-29 ARID ARID/BRIGHT DNA-binding domain;ELM2 domain protein (.1) AT5G04110 87 / 4e-18 GYRB3 DNA GYRASE B3 (.1) AT2G46040 82 / 2e-16 ARID ARID/BRIGHT DNA-binding domain;ELM2 domain protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004658 [exp] 813 / 0 AT1G26580 243 / 1e-74 unknown protein Lus10037097 [exp] 384 / 8e-129 AT1G26580 249 / 4e-76 unknown protein Lus10036888 [exp] 381 / 2e-127 AT1G26580 253 / 1e-77 unknown protein Lus10000680 [exp] 197 / 1e-57 AT1G13880 200 / 3e-59 ELM2 domain-containing protein (.1) Lus10021636 [exp] 190 / 2e-55 AT2G03470 188 / 5e-55 ELM2 domain-containing protein (.1.2) Lus10024636 [exp] 125 / 4e-31 AT4G11400 187 / 5e-53 ARID/BRIGHT DNA-binding domain;ELM2 domain protein (.1) Lus10032272 [exp] 119 / 4e-30 AT4G11400 187 / 6e-55 ARID/BRIGHT DNA-binding domain;ELM2 domain protein (.1) Lus10014762 [exp] 97 / 4e-21 AT2G46040 242 / 4e-72 ARID/BRIGHT DNA-binding domain;ELM2 domain protein (.1) Lus10036373 [exp] 95 / 1e-20 AT4G11400 249 / 8e-75 ARID/BRIGHT DNA-binding domain;ELM2 domain protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G094400 [exp] 296 / 2e-94 AT1G26580 280 / 3e-88 unknown protein Potri.010G159700 [exp] 284 / 7e-90 AT1G26580 253 / 1e-77 unknown protein Potri.017G091900 [exp] 186 / 2e-53 AT1G26580 218 / 2e-65 unknown protein Potri.004G118400 [exp] 180 / 5e-51 AT1G26580 219 / 2e-65 unknown protein Potri.014G086700 [exp] 120 / 9e-29 AT2G46040 247 / 2e-73 ARID/BRIGHT DNA-binding domain;ELM2 domain protein (.1) Potri.001G101800 [exp] 116 / 1e-28 AT4G11400 272 / 1e-86 ARID/BRIGHT DNA-binding domain;ELM2 domain protein (.1) Potri.003G129800 [exp] 119 / 2e-28 AT4G11400 319 / 7e-101 ARID/BRIGHT DNA-binding domain;ELM2 domain protein (.1) Potri.002G161100 [exp] 113 / 1e-26 AT2G46040 221 / 4e-64 ARID/BRIGHT DNA-binding domain;ELM2 domain protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10026655 pacid=23164322 polypeptide=Lus10026655 locus=Lus10026655.g ID=Lus10026655.BGIv1.0 annot-version=v1.0 ATGGGATATAAAAGGGTATTGGAAGATACAGACTTCCAAGGGTTTCCCTTAAATCCCTCGAAGCAGGCAAGGCAACAGGACCTGAGCAATAGGTCGACTC AGTTTGAAGAAAACTTGTCAGATATCAGTTCTCCTAAGAAACCTGATTCTGCAGTTGACCATTGCGATAAGAATGGAAAACAACTGTGTCAAGAGGCATC TGAAAATACTGTTGTCCCCAAGAATTGTACTGATGAGGATATGGGCTTCAGATTGGCTGCTTACACTTCCTTGTTTCCAGAATATTATGAGTATAAGGGC CTACAGGAATATGCCTCATTGAACAATGTGGGCATCCCTTATTTGGATCGCTTTCCCAAAAAGCAAGTTGCTCTTGGACGAAACCATCAAGCCAGTATCC CGTCTTTGTTGATGTCGAGCTCTGGAAATGTCGACGAAGAGGAAAAACTAATGGGCACTTGCATCATTCCGACGCCTGATGAAGAATCTATCTTTATCGA AAGTGACCAGCTTGGATGCAGTGGATCCGAATGTCAGTGCCTGGATGCAGGCTCGTTGAGGTGTGTTCGGCAGCATATAGCAGAAGCGCGGGATAAGCTG AAGAAAGCCTTGGGTCATGAGAAGTTTGTGAGTTTGGGGTTTCACAACATGGGGGAAGAAGTGTCGTGGAAATGGAGCGAGGATGAAGAACGTCTCTTCC GTGCTGTAGTTTATTCGAATCCCATATACCTGGGTCAGAACTTCTGGAAGCACCTCGCACAAGTGTTTCCTTCTCGTTCTGTGAAGGAAATCATCAGCTA TTATTTCAACGTCTTCATGCTTCGCAAGCGAGGAACTCAGAACAGGTCGAGTTTGATGGACATCGACAGTGATGACGACGAATTGCATGGCGTTGACATC GGCACCTATGAAGGTGAAGAATTGGAAGATGATGACGAAGAAGAAGACGATTCGGCCGTTGAATCCCCTGTTGAAGGTTTTGGTCAGTCCAACCGTGGTG AAGACATTGTTACCGAAGATGATGGTGATGATGACGATGGTAATGTTGACATTAGAAAGCGTGTAGAGAACAATGAGGAAGATAACACGACGGTCCAAGA CGACTCGTGCACGTCTTTTGAATTCCAGTCGGAGAAGGACGATCCTTACTACCTGATGAACCGGGAAGTAGATGGTCGTGGCTATATGATGGATGTGGCG GAGCCCATGCTGGACTTCCGCGGCAACGAGAAAGTTCTGTATGAGCTATACTCCACTCTGGAGAAAGCCACTCCGGAAAAATCCCTTAACCCTAAACTTG CTGCGAATGGTGCAACTGTGAAGAAGGTAGATAAAGGTAGTGATGCAGCAGCTGCAGTGGATTTAGTGTCAATGTTGGATTTTCGTGATGAGAAAGCTTG GGACGCAATCTTCCCTGGGTCTGACTAG
AA sequence Show only first row Show all	>Lus10026655 pacid=23164322 polypeptide=Lus10026655 locus=Lus10026655.g ID=Lus10026655.BGIv1.0 annot-version=v1.0 MGYKRVLEDTDFQGFPLNPSKQARQQDLSNRSTQFEENLSDISSPKKPDSAVDHCDKNGKQLCQEASENTVVPKNCTDEDMGFRLAAYTSLFPEYYEYKG LQEYASLNNVGIPYLDRFPKKQVALGRNHQASIPSLLMSSSGNVDEEEKLMGTCIIPTPDEESIFIESDQLGCSGSECQCLDAGSLRCVRQHIAEARDKL KKALGHEKFVSLGFHNMGEEVSWKWSEDEERLFRAVVYSNPIYLGQNFWKHLAQVFPSRSVKEIISYYFNVFMLRKRGTQNRSSLMDIDSDDDELHGVDI GTYEGEELEDDDEEEDDSAVESPVEGFGQSNRGEDIVTEDDGDDDDGNVDIRKRVENNEEDNTTVQDDSCTSFEFQSEKDDPYYLMNREVDGRGYMMDVA EPMLDFRGNEKVLYELYSTLEKATPEKSLNPKLAANGATVKKVDKGSDAAAAVDLVSMLDFRDEKAWDAIFPGSD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G26580			unknown protein		Lus10026655 [exp]	0	1
					Lus10009045 [exp]	2.8	0.8371
AT1G25682			Family of unknown function (DU...		Lus10041495 [exp]	4.9	0.8654
AT4G23430		AtTic32-IVa	translocon at the inner envelo...		Lus10031101 [exp]	9.8	0.8450
AT1G57790			F-box family protein (.1)		Lus10021352 [exp]	10.2	0.8218
AT4G13630			Protein of unknown function, D...		Lus10022791 [exp]	10.4	0.8525
AT4G25670			unknown protein		Lus10039276 [exp]	11.8	0.8606
AT1G19800		ABCI14, TGD1	ATP-binding cassette I14, trig...		Lus10002636 [exp]	12.4	0.8279
AT2G14850			unknown protein		Lus10002120 [exp]	19.0	0.7625
AT3G10210			SEC14 cytosolic factor family ...		Lus10035431 [exp]	19.6	0.8435
AT5G35080			unknown protein		Lus10039972 [exp]	21.0	0.8385

Compare expression of checked genes

Lus10026655 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.