Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G26570 854 / 0 UGD1, ATUGD1 UDP-glucose dehydrogenase 1 (.1) AT3G29360 847 / 0 UGD2 UDP-glucose dehydrogenase 2, UDP-glucose 6-dehydrogenase family protein (.1.2) AT5G39320 846 / 0 UDP-glucose 6-dehydrogenase family protein (.1) AT5G15490 845 / 0 UGD3 UDP-glucose dehydrogenase 3, UDP-glucose 6-dehydrogenase family protein (.1) AT1G26560 658 / 0 BGLU40 beta glucosidase 40 (.1) AT5G54570 503 / 1e-168 BGLU41 beta glucosidase 41 (.1) AT3G18080 421 / 2e-137 BGLU44 B-S glucosidase 44 (.1) AT3G18070 400 / 9e-130 BGLU43 beta glucosidase 43 (.1.2) AT2G44480 388 / 9e-125 BGLU17 beta glucosidase 17 (.1.2) AT5G36890 378 / 3e-121 BGLU42 beta glucosidase 42 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004656 [exp] 992 / 0 AT1G26570 864 / 0.0 UDP-glucose dehydrogenase 1 (.1) Lus10026656 [exp] 976 / 0 AT1G26570 868 / 0.0 UDP-glucose dehydrogenase 1 (.1) Lus10037096 [exp] 869 / 0 AT1G26570 815 / 0.0 UDP-glucose dehydrogenase 1 (.1) Lus10034703 [exp] 867 / 0 AT5G15490 882 / 0.0 UDP-glucose dehydrogenase 3, UDP-glucose 6-dehydrogenase family protein (.1) Lus10004654 [exp] 862 / 0 AT1G26560 773 / 0.0 beta glucosidase 40 (.1) Lus10021626 [exp] 861 / 0 AT5G15490 875 / 0.0 UDP-glucose dehydrogenase 3, UDP-glucose 6-dehydrogenase family protein (.1) Lus10037098 [exp] 708 / 0 AT1G26560 785 / 0.0 beta glucosidase 40 (.1) Lus10036885 [exp] 702 / 0 AT1G26560 778 / 0.0 beta glucosidase 40 (.1) Lus10037988 [exp] 491 / 1e-163 AT5G54570 741 / 0.0 beta glucosidase 41 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G118600 [exp] 859 / 0 AT5G15490 879 / 0.0 UDP-glucose dehydrogenase 3, UDP-glucose 6-dehydrogenase family protein (.1) Potri.010G159800 [exp] 858 / 0 AT5G15490 853 / 0.0 UDP-glucose dehydrogenase 3, UDP-glucose 6-dehydrogenase family protein (.1) Potri.017G092000 [exp] 856 / 0 AT3G29360 898 / 0.0 UDP-glucose dehydrogenase 2, UDP-glucose 6-dehydrogenase family protein (.1.2) Potri.008G094300 [exp] 855 / 0 AT3G29360 858 / 0.0 UDP-glucose dehydrogenase 2, UDP-glucose 6-dehydrogenase family protein (.1.2) Potri.008G094200 [exp] 640 / 0 AT1G26560 798 / 0.0 beta glucosidase 40 (.1) Potri.010G159900 [exp] 629 / 0 AT1G26560 795 / 0.0 beta glucosidase 40 (.1) Potri.001G409900 [exp] 499 / 2e-167 AT5G54570 791 / 0.0 beta glucosidase 41 (.1) Potri.004G040700 [exp] 415 / 3e-135 AT5G44640 548 / 0.0 beta glucosidase 13 (.1) Potri.012G049300 [exp] 415 / 5e-135 AT3G18080 831 / 0.0 B-S glucosidase 44 (.1) Potri.015G041300 [exp] 411 / 1e-133 AT3G18080 839 / 0.0 B-S glucosidase 44 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0106 [flax] [poplar] 6PGD_C PF00984 [flax] [poplar] UDPG_MGDP_dh UDP-glucose/GDP-mannose dehydrogenase family, central domain CL0058 [flax] [poplar] Glyco_hydro_tim PF00232 [flax] [poplar] Glyco_hydro_1 Glycosyl hydrolase family 1 CL0039 [flax] [poplar] HUP PF03720 [flax] [poplar] UDPG_MGDP_dh_C UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CL0063 [flax] [poplar] NADP_Rossmann PF03721 [flax] [poplar] UDPG_MGDP_dh_N UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
Representative CDS sequence Show only first row Show all	>Lus10026657 pacid=23164420 polypeptide=Lus10026657 locus=Lus10026657.g ID=Lus10026657.BGIv1.0 annot-version=v1.0 ATGGTGACCGCAAAAGCAATACTATTAGTGACTGTCGTTCTAGCTTTGGAGTTGGTTGTTTGCTTTTCGCAACCGCAGAGCATCATCAGCAGAGGCAGTT TCCCGAAGGGGTTCGCCTTTGGAACTGCCTCCGCGGCTTTCCAGTACGAAGGAGCTGTTGAAGTTGATGGAAGGGGAGCCACCATTTGGGACACTTACTC TCATACTTTCGGCAAAATTGTGGATTTCAGCAACGCCGATGTAGCTGTCGATCAATACCATCGCTTCGATGATGATATTCGGCTAATGAAGGATATTGGC CTCGATGCTTATAGATTTTCCATCTCTTGGACTCGAATTTTTCCCGATGGAAGTGGAGAATTAAATCAAGGAGGAGTGGACCACTACAACAAGTTCATCG ACGCGTTGCTAGCCAATGGAATCGAGCCGTACGTGACATTGTACCATTGGGACCTTCCACAAGCCTTGTACGACCGCTACACCGGATGGCTCGATCCGCA AATAGTACAAGATTACGCGGCGTACGCAGATACATGCTTTAACAAGTTCGGGGACAGGGTGAAGCACTGGATCACGTTCAACGAGCCCCACACGTTCGCA GTCCAGGGCTACGATTCAGGCCTCGCTGCTCCTGGTCGGTGCTCGTTTCGACTATGGTGCGCGGAGGGGGACTCCCACACCGAGCCTTACATAGTCGCCC ACCACACGATCCTAGCCCACGCAGCTGCTGCGGATATCTACCGAAGAAAGTACAAGCCGACCCAGAAGGGGATCCTGGGAGTTTCGTTCGACGTTGTATG GTTCGAGCCGGGGTCCAGCTCCCCTAGCGACGTTGAGGCCGCCCAACGGGCCCAGGATTTCCAGCTGGGCTGGTTTCTGGACCCGATGATGTTAGGGCAC TACCCGAGCTCGATGAGGAGCAGGGTTGGGGCTCGGTTACCAGAATTTTCCGGTTCGGATGTTTCGTTGGTTAAAGGGTCGTTGGATTTCGTTGGGATTA ATCATTACACGACGTATTATGCAAGCAATAGTTCGTGTGGAATAATTAATTATCTATTGAATGATACTCTTGCTGACTCTGGCACTGTTGCCTACCCGTA TAAAGACGGAAAATCTATTGGTGATCGGGCGAACTCGATATGGTTGTATATAGTACCCGAAGGGATGAGAAGTTTGATGAACTACATCAGGCTTAGATAC GGAAACCCACCCGTCTTCGTGACCGAAAACGGTATGGATGACCCAAACAGCCCTTTCATCCCTATAGAAGATGCATTGAAAGATGACAAGAGGATCAAGT ACCTCAATGACTATCTCACCAACTTGCTAGCTTCAATCAAGAGTGTGGAGTTCTGTGTAGCTAGGAAGCAAATAATGGTCATTGACAAAATGGTGAAGAT CTGCTGCATTGGAGCTGGCTATGTCGGTGGGCCGACAATGGCTGTGATTGCTTTGAAATGCCCCAAAGTTCAAGTGGTTGTGGTGGACATCTCTGTACCA AGAATCACTGCTTGGAACAGTGATCACCTCCCGATTTATGAGCCGGGACTCGATGATGTGGTGAAGCAATGCAGGGGGAAGAACTTGTTCTTCAGCACTG ATGTTGAAAAGCATGTTGCTGAGGCTGACATTGTGTTTGTTTCGGTGAATACCCCGACGAAAACTCAGGGTCTTGGTGCTGGCAAGGCTGCTGATCTCAC CTACTGGGAGAGCGCTGCTCGTATGATTGCTGATGTGTCGAAATCGGATAAGATTGTGGTGGAGAAATCCACTGTTCCTGTCAAAACTGCTGAAGCAATT GAGAGGATTCTGACCCACAACAATAAAGGGATCAACTTCCAGATCCTCTCTAACCCGGAGTTCCTTGCTGAAGGAACTGCAATCAAGGATCTCTTCAATC CAGACCGTGTGCTTATTGGTGGTAGGGAAACCCCGGGAGGACAAAAGGCAATTGAAGCATTGAGAGATGTGTATGCTAATTGGGTTCCTGTGGATCAGAT CATCTGCACCAATCTCTGGTCAGCTGAGCTATCCAAACTGGCTGCAAATGCATTCTTGGCTCAGAGGATCTCTTCTGTCAATGCCATGTCAGCACTTTGC GAGGCAACTGGTGCAGATGTCACACAGGTGGCCCATGCGGTTGGGAAAGACACGAGAATCGGTCCCAAGTTCTTGAATGCCAGTGTTGGGTTTGGTGGAT CTTGTTTCCAGAAAGATATCCTGAACTTGGTCTACATCTGTGAGTGCCATGGCCTTGCTGAGGTTGCTAACTACTGGAAGCAAGTGATTAAGATCAATGA CTACCAGAAGACACGGTTCGTGAACCGGATCGTTTCCTCCATGTTCAACACAGTGTCTGGCAAGAAGATAGCTGTCTTGGGATTTGCATTCAAGAAAGAC ACCGGTGACACCAGGGAGACACCAGCCATTGATGTCTGCAATGGCTTGATTGGCGACAAAGCTAAGATCTGCATTTACGACCCCCAGGTTCAGGAAGAAC AGATTCAGAGGGACCTCGTGTTGAAGAAGTTCGACTGGGATCATCCCCTCCATCTCCAGCCAATGAGCAGCAGCAGCGAAACGTCGGTTAAGCAACTGGT ATCCTGCGTTTCCAATGCTTACGAGGCAACAAAGGGTGCTCACGGGATCTGCATTCTGACTGAGTGGGACGAGTTCAAGACCCTCGATTACCAGAAGATC TACGATGGTATGGAGAAACCGGCTTTTGTCTTTGATGGCAGAAACGTTGTTTATGCTGGAAAGCTGGGGAAGATTGGGTTCATTGTGTATGCCATTGGTA AGCCATTGGATGCTTGGCTTAAGGACATGCCTGCTGTGGCTTAG
AA sequence Show only first row Show all	>Lus10026657 pacid=23164420 polypeptide=Lus10026657 locus=Lus10026657.g ID=Lus10026657.BGIv1.0 annot-version=v1.0 MVTAKAILLVTVVLALELVVCFSQPQSIISRGSFPKGFAFGTASAAFQYEGAVEVDGRGATIWDTYSHTFGKIVDFSNADVAVDQYHRFDDDIRLMKDIG LDAYRFSISWTRIFPDGSGELNQGGVDHYNKFIDALLANGIEPYVTLYHWDLPQALYDRYTGWLDPQIVQDYAAYADTCFNKFGDRVKHWITFNEPHTFA VQGYDSGLAAPGRCSFRLWCAEGDSHTEPYIVAHHTILAHAAAADIYRRKYKPTQKGILGVSFDVVWFEPGSSSPSDVEAAQRAQDFQLGWFLDPMMLGH YPSSMRSRVGARLPEFSGSDVSLVKGSLDFVGINHYTTYYASNSSCGIINYLLNDTLADSGTVAYPYKDGKSIGDRANSIWLYIVPEGMRSLMNYIRLRY GNPPVFVTENGMDDPNSPFIPIEDALKDDKRIKYLNDYLTNLLASIKSVEFCVARKQIMVIDKMVKICCIGAGYVGGPTMAVIALKCPKVQVVVVDISVP RITAWNSDHLPIYEPGLDDVVKQCRGKNLFFSTDVEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAI ERILTHNNKGINFQILSNPEFLAEGTAIKDLFNPDRVLIGGRETPGGQKAIEALRDVYANWVPVDQIICTNLWSAELSKLAANAFLAQRISSVNAMSALC EATGADVTQVAHAVGKDTRIGPKFLNASVGFGGSCFQKDILNLVYICECHGLAEVANYWKQVIKINDYQKTRFVNRIVSSMFNTVSGKKIAVLGFAFKKD TGDTRETPAIDVCNGLIGDKAKICIYDPQVQEEQIQRDLVLKKFDWDHPLHLQPMSSSSETSVKQLVSCVSNAYEATKGAHGICILTEWDEFKTLDYQKI YDGMEKPAFVFDGRNVVYAGKLGKIGFIVYAIGKPLDAWLKDMPAVA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G26570		UGD1, ATUGD1	UDP-glucose dehydrogenase 1 (....		Lus10026657 [exp]	0	1
AT1G26570		UGD1, ATUGD1	UDP-glucose dehydrogenase 1 (....		Lus10026656 [exp]	1.0	0.9840
AT3G46440		UXS5	UDP-XYL synthase 5 (.1.2)		Lus10040847 [exp]	3.5	0.9663
AT2G38080		ATLMCO4, IRX12,...	LACCASE 4, IRREGULAR XYLEM 12,...		Lus10034289 [exp]	3.7	0.9773
AT2G41770			Protein of unknown function (D...		Lus10031076 [exp]	3.7	0.9645
AT3G13130			unknown protein		Lus10016611 [exp]	4.9	0.9699
AT3G46440		UXS5	UDP-XYL synthase 5 (.1.2)		Lus10005900 [exp]	6.3	0.9675
AT3G27200			Cupredoxin superfamily protein...		Lus10041570 [exp]	6.3	0.9622
AT1G26570		UGD1, ATUGD1	UDP-glucose dehydrogenase 1 (....		Lus10004656 [exp]	6.9	0.9545
AT2G04850			Auxin-responsive family protei...		Lus10001162 [exp]	8.7	0.9691
AT3G13130			unknown protein		Lus10004415 [exp]	10.2	0.9529

Compare expression of checked genes

Lus10026657 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.