Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G26520 518 / 0 Cobalamin biosynthesis CobW-like protein (.1) AT1G15730 236 / 1e-73 Cobalamin biosynthesis CobW-like protein (.1) AT1G80480 219 / 2e-67 PTAC17 plastid transcriptionally active 17 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004653 [exp] 677 / 0 AT1G26520 540 / 0.0 Cobalamin biosynthesis CobW-like protein (.1) Lus10018172 [exp] 233 / 2e-72 AT1G80480 610 / 0.0 plastid transcriptionally active 17 (.1) Lus10025665 [exp] 231 / 2e-71 AT1G80480 606 / 0.0 plastid transcriptionally active 17 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G094100 [exp] 532 / 0 AT1G26520 496 / 9e-177 Cobalamin biosynthesis CobW-like protein (.1) Potri.003G030100 [exp] 224 / 4e-69 AT1G80480 607 / 0.0 plastid transcriptionally active 17 (.1) Potri.001G133500 [exp] 217 / 5e-67 AT1G80480 416 / 2e-143 plastid transcriptionally active 17 (.1) Potri.001G201400 [exp] 218 / 7e-67 AT1G80480 442 / 6e-153 plastid transcriptionally active 17 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07683 [flax] [poplar] CobW_C Cobalamin synthesis protein cobW C-terminal domain CL0023 [flax] [poplar] P-loop_NTPase PF02492 [flax] [poplar] cobW CobW/HypB/UreG, nucleotide-binding domain
Representative CDS sequence Show only first row Show all	>Lus10026658 pacid=23164303 polypeptide=Lus10026658 locus=Lus10026658.g ID=Lus10026658.BGIv1.0 annot-version=v1.0 ATGGAGAACGAGGAAGATAATCCACCCGTCGCCGTCGAAATAAACTCACCGGAATCCTCCTCCGGCATTCTCCCCAGCTCAGTAAAAGTCCATGAAGATA CCGTATCAGTTGGAGTCACCGTCATCACCGGCTACCTCGGCTCCGGGAAATCCACTCTTGTTAACTATATCCTGAACGGTAAACACGGGAAGAGGATCGC AGTGATACTGAACGAGTTCGGAGAAGAGATTGGAGTTGAGAGGGCGATGATCAACGAAGGAGACGGAGGTGCTCTTGTGGAGGAATGGGTTGAGCTTGCC AATGGGTGTGTTTGCTGTACCGTTAAACACAGCTTGGTACAAGCATTGGAGCAGCTTGTGCAGATGAAGCAAAGACTTGATCATATTTTGATTGAGACGA CGGGATTGGCGAATCCTGCTCCTCTTGCATCTGTTCTTTGGCTGGATGATCAGTTGGAGTCTGCTGTGAAGCTTGACTCTATCATAACTGTTGTCGATGC TAAAAACCTTGGATTTCAGCTTAAGCAGCAGAAGGACTCTTCCTCATTTCCTGAAGCTGTTTATCAAATAGCATTCGCGGATGTTGTGATTCTTAACAAG GTTGATTTGCTTTCTTCAGAAGGATCTTTGGAAGAGCTCGAGAAGGAAATCCGTGACATCAATTCTCTTGCCAGTATCGTTCGAACTGTTCGATGTCAAG TTGACTTGACAAAGATCCTGGAACGCAATGCATATGATACTGCTCGTGCTACACATTTAGAAGCACTGCTGGAGGAAACGAAATCTCTGTCAACCAAAGA TCTACATGGCAGCGGTGTGCGAACTTTATGCATATCCGAGTCACAGCAGGTTGATCTCGATAAGGTTCGGCTATGGCTCGAGGAGATTCTGTGGGATAAG AAAGACGGGATGGATGTATACCGCTGCAAAGGAGTGTTACAGATTCAAAACTCCGATCAACTGCATACTCTGCAGGGTGTAAGGGAACTATACGAGATCC TACCCTCTCGGAAATCGAAGAATGAGGAAGCCATAACTAACAAGATAGTTTTCATAGGCAGTAACTTGAACGAGGACATCCTTTCGAAATCTTTCAAAGG CTGCATTTCGATATAG
AA sequence Show only first row Show all	>Lus10026658 pacid=23164303 polypeptide=Lus10026658 locus=Lus10026658.g ID=Lus10026658.BGIv1.0 annot-version=v1.0 MENEEDNPPVAVEINSPESSSGILPSSVKVHEDTVSVGVTVITGYLGSGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGDGGALVEEWVELA NGCVCCTVKHSLVQALEQLVQMKQRLDHILIETTGLANPAPLASVLWLDDQLESAVKLDSIITVVDAKNLGFQLKQQKDSSSFPEAVYQIAFADVVILNK VDLLSSEGSLEELEKEIRDINSLASIVRTVRCQVDLTKILERNAYDTARATHLEALLEETKSLSTKDLHGSGVRTLCISESQQVDLDKVRLWLEEILWDK KDGMDVYRCKGVLQIQNSDQLHTLQGVRELYEILPSRKSKNEEAITNKIVFIGSNLNEDILSKSFKGCISI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G26520			Cobalamin biosynthesis CobW-li...		Lus10026658 [exp]	0	1
AT5G53070			Ribosomal protein L9/RNase H1 ...		Lus10022383 [exp]	12.5	0.8467
AT1G13580		LOH3, LAG13	LAG One Homologue 3, LAG1 long...		Lus10030918 [exp]	16.6	0.8331
AT4G17620			glycine-rich protein (.1.2.3)		Lus10030023 [exp]	22.2	0.8026
AT4G22000			unknown protein		Lus10008487 [exp]	25.4	0.8338
AT3G22290			Endoplasmic reticulum vesicle ...		Lus10027795 [exp]	26.2	0.8247
AT5G42630	GARP	KAN4, KANADI4, ...	KANADI 4, ABERRANT TESTA SHAPE...		Lus10032746 [exp]	42.6	0.8217
AT4G08310			unknown protein		Lus10003736 [exp]	44.3	0.8140
AT2G30070		ATKUP1, ATKT1P,...	POTASSIUM UPTAKE TRANSPORTER 1...		Lus10029172 [exp]	48.2	0.8204
AT2G16860			GCIP-interacting family protei...		Lus10027464 [exp]	49.4	0.8193
AT5G61330			rRNA processing protein-relate...		Lus10020496 [exp]	64.3	0.8112

Compare expression of checked genes

Lus10026658 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.