Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G26480 457 / 9e-165 GF14IOTA, GRF12 general regulatory factor 12 (.1) AT1G34760 402 / 2e-143 RHS5, GF14OMICRON, GRF11 ROOT HAIR SPECIFIC 5, general regulatory factor 11 (.1.2) AT2G42590 393 / 1e-139 GENERALREGULATORYFACTOR9, GF14MU, GRF9 general regulatory factor 9 (.1.2.3) AT1G22300 381 / 7e-135 14-3-3EPSILON, GF14EPSILON, GRF10 14-3-3 PROTEIN G-BOX FACTOR14 EPSILON, general regulatory factor 10 (.1.2.3) AT5G38480 355 / 1e-124 RCI1, GRF3 general regulatory factor 3 (.1.2) AT4G09000 353 / 7e-124 GF14CHI, GRF1 GENERAL REGULATORY FACTOR1-G-BOX FACTOR 14-3-3 HOMOLOG ISOFORM CHI, general regulatory factor 1 (.1.2) AT3G02520 352 / 3e-123 GENERALREGULATORYFACTOR7, GF14NU, GRF7 general regulatory factor 7 (.1) AT1G35160 351 / 5e-123 14-3-3PHI, GF14PHI, GRF4 ,GF14 PHI GENERAL REGULATORY FACTOR 4, 14-3-3 PROTEIN G-BOX FACTOR14 PHI, GF14 protein phi chain (.1.2) AT1G78300 351 / 6e-123 14-3-3OMEGA, GF14OMEGA, GRF2 14-3-3 PROTEIN G-BOX FACTOR14 OMEGA, general regulatory factor 2 (.1) AT5G16050 333 / 5e-116 GF14UPSILON, GRF5 general regulatory factor 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004652 [exp] 526 / 0 AT1G26480 457 / 4e-165 general regulatory factor 12 (.1) Lus10036896 [exp] 506 / 0 AT1G26480 462 / 5e-167 general regulatory factor 12 (.1) Lus10001894 [exp] 384 / 6e-136 AT2G42590 405 / 1e-144 general regulatory factor 9 (.1.2.3) Lus10017650 [exp] 382 / 2e-135 AT2G42590 420 / 5e-150 general regulatory factor 9 (.1.2.3) Lus10020705 [exp] 377 / 1e-132 AT2G42590 399 / 2e-141 general regulatory factor 9 (.1.2.3) Lus10029835 [exp] 377 / 1e-132 AT2G42590 417 / 1e-148 general regulatory factor 9 (.1.2.3) Lus10036471 [exp] 374 / 7e-132 AT1G26480 406 / 7e-145 general regulatory factor 12 (.1) Lus10033609 [exp] 379 / 2e-131 AT2G42590 410 / 9e-144 general regulatory factor 9 (.1.2.3) Lus10013908 [exp] 372 / 9e-129 AT2G42590 400 / 1e-139 general regulatory factor 9 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G095000 [exp] 466 / 2e-168 AT1G26480 440 / 3e-158 general regulatory factor 12 (.1) Potri.010G159300 [exp] 458 / 3e-165 AT1G26480 466 / 2e-168 general regulatory factor 12 (.1) Potri.002G097500 [exp] 418 / 1e-149 AT1G26480 419 / 4e-150 general regulatory factor 12 (.1) Potri.005G164500 [exp] 412 / 2e-147 AT1G34760 417 / 3e-149 ROOT HAIR SPECIFIC 5, general regulatory factor 11 (.1.2) Potri.011G110900 [exp] 400 / 3e-142 AT2G42590 424 / 4e-152 general regulatory factor 9 (.1.2.3) Potri.001G392200 [exp] 397 / 2e-141 AT2G42590 428 / 2e-153 general regulatory factor 9 (.1.2.3) Potri.004G101700 [exp] 363 / 1e-127 AT3G02520 472 / 5e-171 general regulatory factor 7 (.1) Potri.017G113300 [exp] 355 / 1e-124 AT3G02520 468 / 2e-169 general regulatory factor 7 (.1) Potri.002G099800 [exp] 355 / 2e-124 AT1G78300 473 / 3e-171 14-3-3 PROTEIN G-BOX FACTOR14 OMEGA, general regulatory factor 2 (.1) Potri.005G162400 [exp] 353 / 9e-124 AT1G78300 475 / 2e-172 14-3-3 PROTEIN G-BOX FACTOR14 OMEGA, general regulatory factor 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00244 [flax] [poplar] 14-3-3 14-3-3 protein
Representative CDS sequence Show only first row Show all	>Lus10026660 pacid=23164296 polypeptide=Lus10026660 locus=Lus10026660.g ID=Lus10026660.BGIv1.0 annot-version=v1.0 ATGTCGTCGTCGACGGAGAAGGAAAGGGAGTGCCATGTCTACATGGCCAAGCTCTCCGAACAGGCCGAGCGATACGAAGAAATGGTGGAGTGCATGAAGA AGGTGGCGAAGCTGGACTGTGAGCTGACCGTGGAGGAGAGGAACCTTCTCTCCGTTGGGTACAAGAACGTGATCGGAGCGCGAAGAGCAGCGTCATGGAG GATCATGTCGTCGATCGAGCAGAAGGAAGAGTCGAAGGGGAACGAGCAGAACGTGAAGCTGATCAAGAGCTACCGCCAGAAGGTCGAAGACGAACTGGCT CAGATTTGTCAGGATATACTTGACATCATCGATAAGCATCTCATTCCTTCCTCTGCCTCCGGGGAAGCCACCGTTTTCTACTACAAAATGAAAGGTGACT ATTTTCGATATCTCGCTGAGTTCAAGACCGAATCGGAGAGGAAGGATGCAGCTGATAAGTCACTCAAGGGTTACGAGGCTGCCTCAGGTACAGCAAGCAC AGAACTGCCATCAACACACCCAATAAGGCTTGGACTTGCACTCAACTTCTCTGTGTTCTACTACGAAATCATGAACTCCCCCGAAAGGGCTTGCCATTTG GCCAAACAGGCCTTTGATGAAGCCATTGCTGAGTTGGACACTTTGAACGAAGAGTCCTACAAGGACAGCACCCTCATTATGCAGCTGTTGAGAGACAATC TCACTCTCTGGACTTCTGACTTGCCCGAAGATGGAGGTGAGGATAACTTCAAAGGTACCGATGAAGGTGCAGCGAAACCTGCAGAACCTTCAACAGCAGG AAAATGA
AA sequence Show only first row Show all	>Lus10026660 pacid=23164296 polypeptide=Lus10026660 locus=Lus10026660.g ID=Lus10026660.BGIv1.0 annot-version=v1.0 MSSSTEKERECHVYMAKLSEQAERYEEMVECMKKVAKLDCELTVEERNLLSVGYKNVIGARRAASWRIMSSIEQKEESKGNEQNVKLIKSYRQKVEDELA QICQDILDIIDKHLIPSSASGEATVFYYKMKGDYFRYLAEFKTESERKDAADKSLKGYEAASGTASTELPSTHPIRLGLALNFSVFYYEIMNSPERACHL AKQAFDEAIAELDTLNEESYKDSTLIMQLLRDNLTLWTSDLPEDGGEDNFKGTDEGAAKPAEPSTAGK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G26480		GF14IOTA, GRF12	general regulatory factor 12 (...		Lus10026660 [exp]	0	1
AT1G12570			Glucose-methanol-choline (GMC)...		Lus10002957 [exp]	2.4	1.0000
AT3G20760			Nse4, component of Smc5/6 DNA ...		Lus10004185 [exp]	3.5	1.0000
					Lus10009800 [exp]	4.9	1.0000
					Lus10010778 [exp]	5.9	1.0000
AT4G01830		ABCB5, PGP5	ATP-binding cassette B5, P-gly...		Lus10004529 [exp]	7.3	1.0000
					Lus10011848 [exp]	7.3	1.0000
AT3G25050		XTH3	xyloglucan endotransglucosylas...		Lus10011845 [exp]	8.5	1.0000
AT2G28320			Pleckstrin homology (PH) and l...		Lus10023522 [exp]	8.8	1.0000
					Lus10022145 [exp]	8.9	1.0000
					Lus10011061 [exp]	9.2	1.0000

Compare expression of checked genes

Lus10026660 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.