Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18650 119 / 1e-33 PDCB3 plasmodesmata callose-binding protein 3 (.1) AT2G03505 110 / 3e-30 Carbohydrate-binding X8 domain superfamily protein (.1) AT1G69295 104 / 3e-27 PDCB4 plasmodesmata callose-binding protein 4 (.1) AT5G61130 103 / 5e-27 PDCB1 plasmodesmata callose-binding protein 1 (.1) AT5G08000 99 / 2e-25 PDCB2, E13L3 PLASMODESMATA CALLOSE-BINDING PROTEIN 2, "glucan endo-1,3-beta-glucosidase-like protein 3", glucan endo-1,3-beta-glucosidase-like protein 3 (.1) AT1G13830 98 / 5e-25 Carbohydrate-binding X8 domain superfamily protein (.1) AT1G26450 97 / 1e-24 Carbohydrate-binding X8 domain superfamily protein (.1) AT4G13600 87 / 8e-21 Carbohydrate-binding X8 domain superfamily protein (.1) AT1G11820 86 / 4e-19 O-Glycosyl hydrolases family 17 protein (.1.2) AT1G79480 83 / 2e-18 Carbohydrate-binding X8 domain superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004650 [exp] 173 / 6e-54 AT1G18650 141 / 4e-42 plasmodesmata callose-binding protein 3 (.1) Lus10037071 [exp] 152 / 1e-45 AT1G18650 138 / 3e-41 plasmodesmata callose-binding protein 3 (.1) Lus10036914 [exp] 152 / 1e-45 AT1G18650 139 / 2e-41 plasmodesmata callose-binding protein 3 (.1) Lus10034690 [exp] 116 / 2e-31 AT1G18650 157 / 8e-48 plasmodesmata callose-binding protein 3 (.1) Lus10021619 [exp] 109 / 7e-29 AT1G18650 151 / 1e-45 plasmodesmata callose-binding protein 3 (.1) Lus10021157 [exp] 108 / 9e-29 AT1G18650 157 / 7e-49 plasmodesmata callose-binding protein 3 (.1) Lus10040522 [exp] 108 / 1e-28 AT1G18650 158 / 7e-49 plasmodesmata callose-binding protein 3 (.1) Lus10032601 [exp] 94 / 2e-23 AT4G13600 167 / 2e-52 Carbohydrate-binding X8 domain superfamily protein (.1) Lus10000278 [exp] 86 / 2e-19 AT1G79480 164 / 7e-47 Carbohydrate-binding X8 domain superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G158900 [exp] 138 / 2e-40 AT1G18650 129 / 1e-37 plasmodesmata callose-binding protein 3 (.1) Potri.008G095300 [exp] 135 / 1e-39 AT1G18650 140 / 2e-42 plasmodesmata callose-binding protein 3 (.1) Potri.015G057800 [exp] 107 / 2e-28 AT1G18650 151 / 3e-46 plasmodesmata callose-binding protein 3 (.1) Potri.012G065750 [exp] 105 / 8e-28 AT1G18650 142 / 1e-42 plasmodesmata callose-binding protein 3 (.1) Potri.017G055700 [exp] 94 / 1e-23 AT4G13600 152 / 3e-46 Carbohydrate-binding X8 domain superfamily protein (.1) Potri.001G315700 [exp] 88 / 4e-21 AT4G13600 155 / 2e-47 Carbohydrate-binding X8 domain superfamily protein (.1) Potri.011G006100 [exp] 87 / 2e-19 AT1G11820 805 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.004G010500 [exp] 87 / 2e-19 AT1G11820 794 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.010G173500 [exp] 84 / 7e-19 AT1G79480 162 / 3e-46 Carbohydrate-binding X8 domain superfamily protein (.1.2) Potri.008G082900 [exp] 84 / 1e-18 AT1G79480 159 / 3e-45 Carbohydrate-binding X8 domain superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07983 [flax] [poplar] X8 X8 domain
Representative CDS sequence Show only first row Show all	>Lus10026662 pacid=23164353 polypeptide=Lus10026662 locus=Lus10026662.g ID=Lus10026662.BGIv1.0 annot-version=v1.0 ATGGCTGTTCTAGTGTTTCTAGCCATGTTCCTGGCCCTCTCTGGCCATTCAAGTGCTAACTACTGTCTTTGCAAAGATGGAGTTGGGGAGCTAGCTCTGC AGAAGGCCCTGGACTACGCCTGTGGAGCTGGAGCTGACTGTACTGCAATCAGCCAGAATGGAGCTTGTTTCCAGCCCAACACCGTCAAAGATCACTGCAG CTATGCTGTCAATAGCTACTTCCAGAAGAAAGGCCAATCTTCTGGGAGCTGTGAGTTCAATGGTGCTGCTACTCCTAGTACTTCACCCCCAACTGGTGTA ACTTCCACCTGTGTTTTCCCTGCAAGCTCTGGAAATGCTGGAACATCACCTACAACGAACCCTGGATCATCAACTCCTGGAACCAGCACCGGAACTGGTA CCAGCACAGGCACTGGAACTGGTACTAGCACTGGGACAGGAAGTACTGGCACAAGTACTGGAACTGGTACAAGCTCTGGAAATGGCACTGGTGGGATGGG AACGGGAACAGGAACTGGAACTGGAACAAGCACAGGGATGAACCCAGAATCATCGTCTACCGGAACTGGAACAACTCCATCCGTGTTTGGAACAGGGTTA GGACCAACTGGGAGTGGAACTGGGATGGGTGACTCTAGTGGTTCTACTTCTACTACTGTGGACTCAACCAAGTTGTTCATCTTGGTTGTTGCTGGGTTGA TGGTGCTTTTGGTTTGA
AA sequence Show only first row Show all	>Lus10026662 pacid=23164353 polypeptide=Lus10026662 locus=Lus10026662.g ID=Lus10026662.BGIv1.0 annot-version=v1.0 MAVLVFLAMFLALSGHSSANYCLCKDGVGELALQKALDYACGAGADCTAISQNGACFQPNTVKDHCSYAVNSYFQKKGQSSGSCEFNGAATPSTSPPTGV TSTCVFPASSGNAGTSPTTNPGSSTPGTSTGTGTSTGTGTGTSTGTGSTGTSTGTGTSSGNGTGGMGTGTGTGTGTSTGMNPESSSTGTGTTPSVFGTGL GPTGSGTGMGDSSGSTSTTVDSTKLFILVVAGLMVLLV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G18650		PDCB3	plasmodesmata callose-binding ...		Lus10026662 [exp]	0	1
AT5G61250		ATGUS1	glucuronidase 1 (.1.2)		Lus10037109 [exp]	2.4	0.8288
AT1G21870		GONST5	golgi nucleotide sugar transpo...		Lus10025645 [exp]	2.6	0.8678
AT1G06530		PMD2	peroxisomal and mitochondrial ...		Lus10020770 [exp]	2.8	0.8257
AT1G06780		GAUT6	galacturonosyltransferase 6 (....		Lus10018773 [exp]	3.5	0.8625
AT4G38660			Pathogenesis-related thaumatin...		Lus10025055 [exp]	3.9	0.8442
					Lus10029272 [exp]	7.1	0.8336
AT1G80350		FTR, FRC2, FRA2...	KATANIN 1, FAT ROOT, FURCA2, F...		Lus10011477 [exp]	8.7	0.8435
AT1G72160			Sec14p-like phosphatidylinosit...		Lus10001539 [exp]	9.2	0.8280
AT2G36390		SBE2.1, BE3	BRANCHING ENZYME 3, starch bra...		Lus10016012 [exp]	9.8	0.8221
AT5G42660			Protein of unknown function (D...		Lus10016294 [exp]	10.6	0.7961

Compare expression of checked genes

Lus10026662 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.