Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G26460 719 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G39710 81 / 9e-16 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G12620 71 / 1e-12 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G59900 70 / 4e-12 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G09900 69 / 5e-12 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT5G02860 69 / 6e-12 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G19440 63 / 4e-10 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT4G31850 62 / 7e-10 PGR3 proton gradient regulation 3 (.1) AT3G16890 62 / 8e-10 PPR40 pentatricopeptide (PPR) domain protein 40 (.1) AT1G62670 61 / 1e-09 RPF2 rna processing factor 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004649 [exp] 1127 / 0 AT1G26460 748 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10006373 [exp] 82 / 8e-16 AT3G53700 1012 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012328 [exp] 80 / 3e-15 AT3G53700 1010 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10017684 [exp] 77 / 3e-14 AT4G28010 596 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10023863 [exp] 77 / 3e-14 AT5G12100 728 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10039056 [exp] 75 / 1e-13 AT5G64320 832 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10031792 [exp] 72 / 7e-13 AT1G79080 539 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10042081 [exp] 71 / 2e-12 AT5G50280 648 / 0.0 embryo defective 1006, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10031215 [exp] 69 / 5e-12 AT1G79080 544 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G159100 [exp] 776 / 0 AT1G26460 766 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G249800 [exp] 73 / 3e-13 AT5G12100 774 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.005G038400 [exp] 71 / 1e-12 AT1G12700 478 / 7e-161 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.002G109500 [exp] 71 / 1e-12 AT1G09900 855 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.017G070800 [exp] 69 / 7e-12 AT3G46610 780 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.005G046000 [exp] 66 / 4e-11 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G035700 [exp] 65 / 1e-10 AT1G05670 922 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) Potri.010G234500 [exp] 65 / 1e-10 AT1G74580 1034 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.008G185000 [exp] 64 / 1e-10 AT1G13040 627 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.013G032600 [exp] 62 / 5e-10 AT1G12700 493 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10026663 pacid=23164224 polypeptide=Lus10026663 locus=Lus10026663.g ID=Lus10026663.BGIv1.0 annot-version=v1.0 ATGATCGGTAGGCTTAGCTCCATCAGATCTATCTCCACTTTCCATTTCCACTGCCAGCAGCACGCGGCGACGGAGCCACCCGAAGTCTACGCCGCCGGCT CTGCACAGACACCTCTCCCGCCGAATCCAGCCTCGGGAAGCCCGCTCTACAACGAGAACTGGCGACGTCCCGGCCAGTCCCCCGGGCTGGCCCTACCACA GTCGCTACAAGCGTTCCAGCGGGCTCCGATGTCGCAGATGATCTACCAGACGTTCGACGTCGGCTCGCTGCTGAATCTGTTCGGCGAGTGGATGACGTCG CAGCGGTGGTCGGACATGAAGGAGCTGTTCGAGTTCTGGGTGAAGTCGCTGGACAAGAACGGGAAGCCGAACAAGCCCGACGTGGATCTGTGTAACCATT ATCTTAGAGCGAATCTGATGATGGGAGCTACCACTGGGGATTTGGTTGATATGGTTTCCGGGATGCAGGACTTCGACATTGAGCCGAATACAGCTTCGTT TAATTTGGTGTTGAAGGCAATGAACTGGGCTAAGGAGACTGAAGCTGCTGAGAAGTTGCTGCAGCGGATGGAGACGACAGGGAAAGAATCTCAGCCAGAT GATGAGTCGTATGACTTGGTCATTAGCATGCTGTTGCAGGCAGATGAAATCGATAATGCCTTCAAGTATATTGACAAGATCTTGAAAACGGGCCATACAT TATCCATGAAAGTATTCAATGAATCCGTGCAGATTTGTGTACGCAAAAGGAGATTCGATGTGTTGGAATCGATTATTGAAAAGTGCAAGGCAACTGAGCA GAACAAGGCACTCGCCCCAACTTGGAACATGTGCTACACTATTGCTGACGCTGGAATGGAGGGAGATAACAGTAATCTTACATTATCTGCTCTTAAGTTC ATGGCCAAATGGATTGCCAGAGGGGAGACTGCCCAACCGGCTGTACATCTCGCTGTAGATGAAGGACTAATCGTGGCGGCACTTTCAACTGCCGGCAGGA CATGCAATCCTACTCTGCTCGATCCGTCGTGGGCTGTTCTTAAACATTCATTGCGTGGGAACAAGGCTCCTAATCCGGAGTCGTATCTTGGGAAGATTTA TGCACACGCATCTCTGGGGAGTTTACAACAAGCTTTCGCTACCCTGAAGGAATTCGAGGCTGCTTATGGGGGTTTCGACAAAGAAAAACAAGAAGAGCTG TTCTCTCCGTTTACTTCCCTACGCCCGTTAGTGCTGGCTTGCTCCAAGAACGGCTTTGCATCTCTTGACTTGGTGTACACCCAACTGGAGAATGTGAGCC AAGGTGCATCCCCATACAAATCAGTTGCTGCTCTCAATTGCGTGATTTTGGGGTGTGCGAATGTATGGGACCTTGACCGTGCCTACCAGACATTTGAGGC GATCGGGACTTCTTTTGGGTTAACCCCTGACATCCACTCATATAACGCATTGGTGTTCGCCTTTGCAAGGTTGAAGAAGACGGACGAAGCTTCGAAAGTG TTTGAACACATGGTAGGCTTGGGGATCAAACCCAATGCAATGTCATATTCATTGATTGTCGATGCTCATCTCATCAACCGAGATGCAAAAGCGGCTGTAT CCACCATCAACAATATGGTTGCTGAAGGGTTCGTTCCCACAAAGGAAATGCTAAGGAAGGTCAGAAGACGGTGCACCCGAGAGATGGACTCAGAGAGCGA TAAAAAGGTCACATCATTCATCGGACAGTTTAAGATTAGAACGGGCGGAGAGTCACGAAGAGACATGCTGTTCAGTCTTCAGTACAGCACTGATTTCGCT TTGATCGGTAGGCATGCACATCCGATGCTGTAG
AA sequence Show only first row Show all	>Lus10026663 pacid=23164224 polypeptide=Lus10026663 locus=Lus10026663.g ID=Lus10026663.BGIv1.0 annot-version=v1.0 MIGRLSSIRSISTFHFHCQQHAATEPPEVYAAGSAQTPLPPNPASGSPLYNENWRRPGQSPGLALPQSLQAFQRAPMSQMIYQTFDVGSLLNLFGEWMTS QRWSDMKELFEFWVKSLDKNGKPNKPDVDLCNHYLRANLMMGATTGDLVDMVSGMQDFDIEPNTASFNLVLKAMNWAKETEAAEKLLQRMETTGKESQPD DESYDLVISMLLQADEIDNAFKYIDKILKTGHTLSMKVFNESVQICVRKRRFDVLESIIEKCKATEQNKALAPTWNMCYTIADAGMEGDNSNLTLSALKF MAKWIARGETAQPAVHLAVDEGLIVAALSTAGRTCNPTLLDPSWAVLKHSLRGNKAPNPESYLGKIYAHASLGSLQQAFATLKEFEAAYGGFDKEKQEEL FSPFTSLRPLVLACSKNGFASLDLVYTQLENVSQGASPYKSVAALNCVILGCANVWDLDRAYQTFEAIGTSFGLTPDIHSYNALVFAFARLKKTDEASKV FEHMVGLGIKPNAMSYSLIVDAHLINRDAKAAVSTINNMVAEGFVPTKEMLRKVRRRCTREMDSESDKKVTSFIGQFKIRTGGESRRDMLFSLQYSTDFA LIGRHAHPML

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G26460			Tetratricopeptide repeat (TPR)...		Lus10026663 [exp]	0	1
AT4G32330			TPX2 (targeting protein for Xk...		Lus10002012 [exp]	3.0	0.9267
AT5G54440		CLUB, AtTRS130	CLUB (.1)		Lus10021681 [exp]	4.0	0.9170
AT4G09160			SEC14 cytosolic factor family ...		Lus10009458 [exp]	4.2	0.9060
AT1G11680		EMB1738, CYP51A...	embryo defective 1738, CYTOCHR...		Lus10001713 [exp]	4.6	0.9183
AT5G38640			NagB/RpiA/CoA transferase-like...		Lus10027234 [exp]	4.7	0.8973
AT3G15010			RNA-binding (RRM/RBD/RNP motif...		Lus10015290 [exp]	6.5	0.9105
AT5G63840		PSL5, RSW3	RADIAL SWELLING 3, PRIORITY IN...		Lus10020887 [exp]	7.7	0.9199
AT1G08010	GATA	GATA11	GATA transcription factor 11 (...		Lus10021466 [exp]	8.8	0.8921
AT5G41950			Tetratricopeptide repeat (TPR)...		Lus10001675 [exp]	10.2	0.9082
AT5G38460			ALG6, ALG8 glycosyltransferase...		Lus10017594 [exp]	11.7	0.8893

Compare expression of checked genes

Lus10026663 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.