Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G03510 536 / 0 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) AT1G08360 329 / 1e-110 Ribosomal protein L1p/L10e family (.1) AT2G27530 328 / 2e-110 PGY1 PIGGYBACK1, Ribosomal protein L1p/L10e family (.1.2) AT5G22440 327 / 8e-110 Ribosomal protein L1p/L10e family (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004648 [exp] 1080 / 0 AT2G03510 541 / 0.0 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Lus10036912 [exp] 571 / 0 AT2G03510 503 / 2e-180 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Lus10037073 [exp] 398 / 3e-136 AT2G03510 354 / 1e-122 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Lus10020615 [exp] 343 / 3e-114 AT2G27530 313 / 1e-107 PIGGYBACK1, Ribosomal protein L1p/L10e family (.1.2) Lus10036911 [exp] 348 / 3e-112 AT2G03530 575 / 0.0 ARABIDOPSIS THALIANA UREIDE PERMEASE 2, ureide permease 2 (.1.2) Lus10037074 [exp] 0 / 1 AT2G03590 575 / 0.0 ureide permease 1 (.1) Lus10004871 [exp] 0 / 1 AT2G27530 201 / 3e-92 PIGGYBACK1, Ribosomal protein L1p/L10e family (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G158700 [exp] 597 / 0 AT2G03510 557 / 0.0 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Potri.007G034800 [exp] 337 / 1e-113 AT2G27530 338 / 2e-119 PIGGYBACK1, Ribosomal protein L1p/L10e family (.1.2) Potri.004G202832 [exp] 336 / 3e-113 AT2G27530 337 / 7e-119 PIGGYBACK1, Ribosomal protein L1p/L10e family (.1.2) Potri.007G035600 [exp] 335 / 6e-113 AT2G27530 339 / 9e-120 PIGGYBACK1, Ribosomal protein L1p/L10e family (.1.2) Potri.004G202766 [exp] 328 / 4e-110 AT1G08360 336 / 1e-118 Ribosomal protein L1p/L10e family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0433 [flax] [poplar] SPFH PF01145 [flax] [poplar] Band_7 SPFH domain / Band 7 family CL0433 [flax] [poplar] PF00687 [flax] [poplar] Ribosomal_L1 Ribosomal protein L1p/L10e family
Representative CDS sequence Show only first row Show all	>Lus10026664 pacid=23164314 polypeptide=Lus10026664 locus=Lus10026664.g ID=Lus10026664.BGIv1.0 annot-version=v1.0 ATGGATTCACAACGAGGAGGAGGAGTAGCTTCACCACAGCAACGGCGCCCGCCGCCGCCAACCGGTTCCGGAAACCCCCTTTCCACAATTCTGCTCTCCA TCGTCATCCTCGCTATGGCAGTAGTTCCGTTATCATCAAACTTAAATAGTAGCTTTGCGATACTGCATCAAGTGCCAGAAGGCCATGTTGGGGTATACTG GAGAGGAGGTGCCCTTTTGAACACAATTACAGAACCAGGTTTTCATTTCAAGTTGCCTTTGATAACCCAGTACGAGCCAGTTCAAGTGACACTCCAGACA GACCAAGTGAGGGACATCCCTTGCGGTACTAAAGGTGGTGTCTTGATAAACTTCGAAAAGATTGAGGTTGTGAATCGACTTCATAAGGATTACGTGTATG ATACCTTGTTGAACTATGGAGTGCAGTACGACCATACCTGGATCTATGACAAGATTCACCATGAAATCAATCAGTTCTGCAGCTCTCATTCTCTTCAGCA GGTCTATATTGACATGTTTGATCAGATTGATGAAAAGATGAAAGATGCTCTTCAGGCTGATTGTACCAAGTACGCTCCTGGAATCGAAATCCTAAGTGTG CGTATAACGAAGCCTTTGATTCCACAGAGTATCCGAAAGAATTTTGAGCACATGGAAGAAGAACGTACAAAGGTTCTGATTGCCATTGAGAAGCAACAAG TGGTGGAGAAGGAGGCAGAGACGGCGAAGAAGATGGCTATCAGTGAAGCTGAGAAGAGTGCCAGTGTGAGCAAGATTCGAATGGAGCAGATGTTGATGGA GAAGGACAGTGAAAGGAGCCAGCAAGAGATTGCAAACCACATGTACATGGCTCATGAGAAGAGCTTAGCAGATGCTGCATTCTACAGGGTGATGAAAGAG GCTGAAGCGAACAAATTGAAGCTGACACCGCAGTTTCTCGAGCTCAAATTCATCGAAGCCATAGCCGGCAACACGAAGATGTTCTTCGGAGAGAAGGTCC CAAACATGGTTCTTGACCAGAGGCTGCTGGGGAACTTTCTACAACAGACGAGTTTCGAAAAGTCGCCGAAGGACATTGATAAGTCCGACATTAAGCTTCA GAGTGAGTCGTTGAGAGAAGCAATCTCGACCATTAAGACTGCTGCACAAGAGAAGCCGCGAAAGTTTACCGAGACTATCGAGCTCCAGATTGGTTTGAAA AACTATGACCCGCAAAAGGACAAGCGTTTCAGTGGCTCTGTCAAGTTGCCCCACATTCCCAGGCCTAAGATGAAGGTCTGCATGCTTGGAGATGCCCAGC ACGTCGAAGAGGCAAATGCAATGGGTCTGCAATCCATGGATGTTGAGAGCTTAAAGAAGCTGAACAAGAACAAGAAGCTAGTGAAGAAGCTTGCCAAGCA GTACCATGCTTTCTTGGCCTCTGAATCTGTCATCAAGCAGATTCCCCGTCTTCTCGGCCCTGGAAAGTTCCCTACACTTGTGAGTCACCAGGAGTCCCTT GAGTCGAAGGTCAACGAGATCAAGGCCACTGTCAAGTTCCAGCTGAAGAAGGTACTCTGCATGGGTGTTGCAGTCGGAAACTTGGACATGGACGAGAAGC AGATCTTCCAGAATGTCCAGATGAGTATCAACTTCCTTGTCTCCCTGCTGAAGAAGAACTGGCAGAACGTGAAGGTTCTGAACCTGAAGAGTACCATGGG AAAGCCAGTACAAATCTTCTAA
AA sequence Show only first row Show all	>Lus10026664 pacid=23164314 polypeptide=Lus10026664 locus=Lus10026664.g ID=Lus10026664.BGIv1.0 annot-version=v1.0 MDSQRGGGVASPQQRRPPPPTGSGNPLSTILLSIVILAMAVVPLSSNLNSSFAILHQVPEGHVGVYWRGGALLNTITEPGFHFKLPLITQYEPVQVTLQT DQVRDIPCGTKGGVLINFEKIEVVNRLHKDYVYDTLLNYGVQYDHTWIYDKIHHEINQFCSSHSLQQVYIDMFDQIDEKMKDALQADCTKYAPGIEILSV RITKPLIPQSIRKNFEHMEEERTKVLIAIEKQQVVEKEAETAKKMAISEAEKSASVSKIRMEQMLMEKDSERSQQEIANHMYMAHEKSLADAAFYRVMKE AEANKLKLTPQFLELKFIEAIAGNTKMFFGEKVPNMVLDQRLLGNFLQQTSFEKSPKDIDKSDIKLQSESLREAISTIKTAAQEKPRKFTETIELQIGLK NYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEANAMGLQSMDVESLKKLNKNKKLVKKLAKQYHAFLASESVIKQIPRLLGPGKFPTLVSHQESL ESKVNEIKATVKFQLKKVLCMGVAVGNLDMDEKQIFQNVQMSINFLVSLLKKNWQNVKVLNLKSTMGKPVQIF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G03510			SPFH/Band 7/PHB domain-contain...		Lus10026664 [exp]	0	1
AT1G26880			Ribosomal protein L34e superfa...		Lus10012829 [exp]	1.7	0.9636
AT1G26880			Ribosomal protein L34e superfa...		Lus10030477 [exp]	3.2	0.9627
AT5G15200			Ribosomal protein S4 (.1.2)		Lus10012839 [exp]	4.5	0.9515
AT2G44120			Ribosomal protein L30/L7 famil...		Lus10029423 [exp]	4.9	0.9592
AT2G03590		ATUPS1	ureide permease 1 (.1)		Lus10037074 [exp]	4.9	0.9563
AT5G27850			Ribosomal protein L18e/L15 sup...		Lus10041264 [exp]	5.5	0.9503
AT1G07770		RPS15A	ribosomal protein S15A (.1.2)		Lus10032503 [exp]	6.0	0.9391
AT1G34030			Ribosomal protein S13/S18 fami...		Lus10034179 [exp]	10.8	0.9053
AT4G18100			Ribosomal protein L32e (.1)		Lus10020410 [exp]	13.9	0.9411
AT2G44120			Ribosomal protein L30/L7 famil...		Lus10004220 [exp]	15.2	0.9486

Compare expression of checked genes

Lus10026664 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.