Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G03630 61 / 1e-10 unknown protein AT5G39200 50 / 6e-07 unknown protein AT3G02125 50 / 2e-06 unknown protein AT1G74220 47 / 1e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004647 [exp] 282 / 2e-91 AT2G03630 62 / 6e-11 unknown protein Lus10036900 [exp] 102 / 3e-23 AT2G03630 82 / 3e-17 unknown protein Lus10037082 [exp] 101 / 4e-23 AT2G03630 82 / 2e-17 unknown protein Lus10013196 [exp] 60 / 9e-10 AT3G02125 67 / 5e-13 unknown protein Lus10030710 [exp] 60 / 1e-09 AT5G39200 71 / 3e-14 unknown protein Lus10032983 [exp] 55 / 4e-08 AT3G02125 59 / 6e-10 unknown protein Lus10029645 [exp] 53 / 1e-07 AT2G03630 62 / 4e-11 unknown protein Lus10021153 [exp] 45 / 7e-05 AT5G08020 884 / 0.0 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G158000 [exp] 80 / 5e-16 AT2G03630 108 / 7e-27 unknown protein Potri.008G096300 [exp] 78 / 2e-15 AT2G03630 91 / 2e-20 unknown protein Potri.017G094300 [exp] 61 / 3e-10 AT5G39200 70 / 3e-14 unknown protein Potri.015G057200 [exp] 57 / 1e-08 AT1G74220 77 / 9e-16 unknown protein Potri.012G061700 [exp] 53 / 2e-07 AT1G74220 91 / 1e-20 unknown protein Potri.004G120400 [exp] 52 / 2e-07 AT5G39200 68 / 1e-13 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10026665 pacid=23164203 polypeptide=Lus10026665 locus=Lus10026665.g ID=Lus10026665.BGIv1.0 annot-version=v1.0 ATGGCGTTAGTTATTAAACAGCCGCCTAAATCATCGGCGAGCCATTCGTCACCAAAGTCTCAACCTTTCATCCTCTCCAACCCAAATTCCGATAACCCAT CAAACCCCACGAATCCTTTCATTCTCTCTTCTGTGGTTGACATTGTTTGGACTCCGATCATTCAAGGTGGGGAGAGAAAAGGAGCAGCCGGTGGATGCTC CTTCCGCCGCCGACGATCTGATTCAACCGGGATCGTCGGAGTTCGTATTCCTCGGCGGAGGGTTCGATCCTCTCCTCTGTTCTCCGACCACTTTTCTCAC ATCTATCAAACGCTTCACCAATGGATACAATGGTTATTATTGATTAGCACTAACGTTCGTAACTGCTCTGTTTACTCAGTTATGGATGATGGGGATGAGA CAGGAAGCAGTACTGAATATTCTACAGGGATAGGCTCTGATATATCATCCAATGAGGATGATCGAAGCAGTCGGGACTCGAGTCGCAACCGTTTCGATGT TGTTCCCGAGATGATCGACAGACGAATTAGTCATAAGAATTCGCAGTCGGAAAAGGAAACTAATCATGGAAGCTCCAGCATTGGTTCCTTCAAGATAGAT GATGATGTTCATCATTCAGCCTGTAAAGGTAACAAAACAAGATTCCCAATCATCAAAATGGCTTCCTCCTCTTCCGAATCCTCCTTGGAGTCCGATGCAA GCAACGATTTCGACTTCGAAACTCACAATCCAGTGTTCAAAGGCAAACCAGCTGCAAACATTGCACCTACTACACAGTTCCCTCCGATCCAAGTCATGCA GAGATCGGAAGGCTACGAGCCAGACCGGATACCATCATCGGTGTTCCAGAGGAACACCGATGATGCGCACATCAGCGATTGGAGCGTGGCATCGAATGAG TCGTTGTTCAGCATTCATGTAGGGAACAGCCATAGCCTCACTAGAGAACAAGCGGCGATGATCATCAACTCGCAGCACGCGCAGCAGGAGTTGTTTTCAT TCACCCCTCCTCGATCGGAGCAAGAGTCCCCGAGTAGTCCTACTGCATTTCCAGCCTCTTCTCCGGCTGATGAACCTCGAGAAGAGGAGGGGGATGAAGA GGGTGAAGAGACAACATCTACACCTTCAGATGGACATGAACGTGATCCGGAGAAAGTTCCGACTGTGTCATGGAAATCATCTTCGAAATATTCGGAGAAG AGTCAGAACAGCAGCCAGTCTTTTGCTTTTCCAATATGA
AA sequence Show only first row Show all	>Lus10026665 pacid=23164203 polypeptide=Lus10026665 locus=Lus10026665.g ID=Lus10026665.BGIv1.0 annot-version=v1.0 MALVIKQPPKSSASHSSPKSQPFILSNPNSDNPSNPTNPFILSSVVDIVWTPIIQGGERKGAAGGCSFRRRRSDSTGIVGVRIPRRRVRSSPLFSDHFSH IYQTLHQWIQWLLLISTNVRNCSVYSVMDDGDETGSSTEYSTGIGSDISSNEDDRSSRDSSRNRFDVVPEMIDRRISHKNSQSEKETNHGSSSIGSFKID DDVHHSACKGNKTRFPIIKMASSSSESSLESDASNDFDFETHNPVFKGKPAANIAPTTQFPPIQVMQRSEGYEPDRIPSSVFQRNTDDAHISDWSVASNE SLFSIHVGNSHSLTREQAAMIINSQHAQQELFSFTPPRSEQESPSSPTAFPASSPADEPREEEGDEEGEETTSTPSDGHERDPEKVPTVSWKSSSKYSEK SQNSSQSFAFPI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G03630			unknown protein		Lus10026665 [exp]	0	1
AT3G59500			Integral membrane HRF1 family ...		Lus10008752 [exp]	1.0	0.7810
AT3G19300			Protein kinase superfamily pro...		Lus10034770 [exp]	5.5	0.7261
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10001037 [exp]	6.3	0.7533
AT1G47960		ATC/VIF1, C/VIF...	cell wall / vacuolar inhibitor...		Lus10027947 [exp]	6.9	0.7291
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10001036 [exp]	7.7	0.7077
					Lus10031653 [exp]	13.0	0.6611
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10006693 [exp]	13.2	0.7118
AT5G18460			Protein of Unknown Function (D...		Lus10006861 [exp]	14.1	0.7118
AT5G12060			Plant self-incompatibility pro...		Lus10023085 [exp]	15.0	0.7118
AT3G21260		GLTP3	GLYCOLIPID TRANSFER PROTEIN 3,...		Lus10018917 [exp]	15.2	0.7106

Compare expression of checked genes

Lus10026665 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.