Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02130 536 / 6e-178 TOAD2, RPK2, CLI1 TOADSTOOL 2, clv3 peptide insensitive 1, receptor-like protein kinase 2 (.1) AT1G69270 477 / 1e-162 RPK1 receptor-like protein kinase 1 (.1) AT2G35620 248 / 1e-73 FEI2 FEI 2, Leucine-rich repeat protein kinase family protein (.1.2) AT2G23950 240 / 3e-70 Leucine-rich repeat protein kinase family protein (.1) AT3G25560 239 / 1e-69 NIK2 NSP-interacting kinase 2 (.1.2.3) AT5G63930 243 / 8e-69 Leucine-rich repeat protein kinase family protein (.1) AT1G17230 242 / 1e-68 Leucine-rich receptor-like protein kinase family protein (.1) AT1G60800 231 / 5e-67 NIK3 NSP-interacting kinase 3 (.1) AT1G34110 235 / 5e-66 Leucine-rich receptor-like protein kinase family protein (.1) AT5G07280 234 / 1e-65 EXS, EMS1 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004646 [exp] 1144 / 0 AT3G02130 552 / 0.0 TOADSTOOL 2, clv3 peptide insensitive 1, receptor-like protein kinase 2 (.1) Lus10037083 [exp] 708 / 0 AT3G02130 569 / 0.0 TOADSTOOL 2, clv3 peptide insensitive 1, receptor-like protein kinase 2 (.1) Lus10036899 [exp] 682 / 0 AT3G02130 559 / 0.0 TOADSTOOL 2, clv3 peptide insensitive 1, receptor-like protein kinase 2 (.1) Lus10010087 [exp] 511 / 2e-168 AT3G02130 962 / 0.0 TOADSTOOL 2, clv3 peptide insensitive 1, receptor-like protein kinase 2 (.1) Lus10007206 [exp] 508 / 4e-167 AT3G02130 964 / 0.0 TOADSTOOL 2, clv3 peptide insensitive 1, receptor-like protein kinase 2 (.1) Lus10031976 [exp] 405 / 9e-133 AT3G02130 531 / 2e-175 TOADSTOOL 2, clv3 peptide insensitive 1, receptor-like protein kinase 2 (.1) Lus10000509 [exp] 235 / 5e-66 AT1G34110 1464 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10020936 [exp] 223 / 7e-63 AT4G08850 793 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10008712 [exp] 225 / 1e-62 AT4G08850 1009 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G096400 [exp] 568 / 0 AT3G02130 1140 / 0.0 TOADSTOOL 2, clv3 peptide insensitive 1, receptor-like protein kinase 2 (.1) Potri.017G094400 [exp] 549 / 0 AT3G02130 1405 / 0.0 TOADSTOOL 2, clv3 peptide insensitive 1, receptor-like protein kinase 2 (.1) Potri.004G120500 [exp] 541 / 1e-179 AT3G02130 1375 / 0.0 TOADSTOOL 2, clv3 peptide insensitive 1, receptor-like protein kinase 2 (.1) Potri.014G144600 [exp] 426 / 2e-136 AT3G02130 785 / 0.0 TOADSTOOL 2, clv3 peptide insensitive 1, receptor-like protein kinase 2 (.1) Potri.004G059100 [exp] 253 / 2e-75 AT5G45780 837 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.005G198000 [exp] 247 / 3e-70 AT1G34110 1381 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.012G088100 [exp] 240 / 1e-67 AT5G56040 1005 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.002G063300 [exp] 238 / 4e-67 AT1G34110 1400 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.008G007600 [exp] 233 / 1e-65 AT1G73080 981 / 0.0 PEP1 receptor 1 (.1) Potri.019G025500 [exp] 230 / 2e-64 AT5G63930 1320 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10026666 pacid=23164323 polypeptide=Lus10026666 locus=Lus10026666.g ID=Lus10026666.BGIv1.0 annot-version=v1.0 ATGAAACTGCGAAAGCTGGTCATTGAACCCTTCATCTTATTCTTCCTCGTGCTCTGTGTCTCATTCCTTTACAGAGCTTCATCCTCGCCGGAGAAGTCAG CTCTGCTACACTTCAAGTCAACAGTTGCCGATCTTGACGGAGTCCTCTCCGCCTGGAACTCAACCCACCACTGTTCATTTCCAGGTGTCACCTGCAACTC CATGGCACAAATCATCTCCTTGAGACTCTCCGGTTCGAACCGGAACAGTAAGCTGGCAGGAAAGCTCTCGCCTTTAATCGGAAAACTCAGCAAGCTTAAG GTTTTATCTCTGCCGTTTCATGAACTCAGAGGAGAAATTCCCACGGAGATTTGGGGGTTGCGGGAGCTGGAAGTGCTTAATCTTGAAGGGAATTTGATTT CATCAATGGAATTTCAATTTCCATCTACTTCTGGTGAGTTGAGGAAAAAGTTGAGGGTTTTGAATATGGGGTTCAACCGGATTCGGGGACCAATTCCCGG TTCAATTTCGAGATTTGACCGCTTGGAGGTGTTGAATTTAGCTGGTAATCAGCTGAATGGGACAGTTCCGACCAGTTTGGGTAACTGTCATCAGCTGAAG ATGATATTTTTGCGTTCGAATCGGTTAACGGGACGAATTCCCAGCGAATTCGGGCGGTTGAGGCAGCTCCGCGTTCTTGATTTGAGCAAAAACAAGCTCA CCGGACCGTTTCCGAGGAGCCTGTTTCGAAAATGTAGCGAGATGCACTGTCTGATCGTTAATGTTCGGAGTCAAGTGTCGAGTTTAGCTGTTACTTCTAG CTCAAGCAATGTAAGAAGAACCCTATCTGCAGCTGGTCAAGTGTCCTTAAGATATGCATTGCCCGAGAATCGGACTGAAATCCATGTCGAGAGTTCGAGT ACTACAGCTCGAAACGATGGGATGAGACCGATCGAAATAGCATCTGTGGTTTCCGCATCGGCCATCGTCTCAGTCCTGATACTGTTGGTGATCATGTTCT TCTACTTGAGAAAACGGGCACCGAATGCTCGGGTGGTTCAGTTCTCGGAACCGAAGGAGATCATCGAATTCGTCGACGTCGGAGTTCCCTTGCTCTACGA AGAAATCGTGCTAGCAACGGAGAACTTCAGCATGCGGAACTGCATCGGAAACGGAGGCTTCGGCGCTACTTACAAGGCCGAGATCGCTCCGGAAACCCTC CTCGCGATCAAGAGGCTTGCTATCGGAAGGTTCAATCAAGGCGTCCGGCAGTTCCACGCCGAGATCAAGGCTCTAGGTACGATGAAGCACCCGAATCTGG TAACATTACTTGGCTTCCATGCTAGCGAATCCGAAATGTTCTTGATATACAACTACTTACCCGGAGGCAATCTCGAGTCCTTCATTCGAGAAAGATCGGC ATCTAGTTTTCGATGGAAGACGCTCCACAAGATCGCAATGGACATCGCTCGAGCACTAACGTACTGCCACGATCAGCGAATCCTCCACCGTGATGTCAAG CCGAGTAACATCCTCCTTGACGATTCCCACAACGCATACCTCTCCGATTTCGGGCTCGCCAGGCTACTCGGGACATCGGAGACCCACGCTACGACCGGCG TGGCAGGGACGTTCGGCTACGTGGCTCCCGAATACGCGATGACATGTCGTGTATCGGAGAAGGCCGATGTGTACAGCTACGGGGTGGTGTTGCTCGAGCT GATATCGGACAAAAAAGCGTTAGATCCTTCGTTTTCGTCGCAGGAGAACGGGTTCAATATAGTGTCGTGGGCATGTATGCTGCTGAGGAACGGTAGGGCA AAAGAAGTGTTCGCCGCCGGGCTGTGGGAGCTGAGTCCTCATGATGATTTGGTTGAAATGCTGCATTTGGCTGTGACTTGTACCGATGAGACTCTTTCGA CTAGGCCGACTATGAAACAGGTTCTACACAGGCTCCGGCTAATCAGACCAGGTTCGAACTGA
AA sequence Show only first row Show all	>Lus10026666 pacid=23164323 polypeptide=Lus10026666 locus=Lus10026666.g ID=Lus10026666.BGIv1.0 annot-version=v1.0 MKLRKLVIEPFILFFLVLCVSFLYRASSSPEKSALLHFKSTVADLDGVLSAWNSTHHCSFPGVTCNSMAQIISLRLSGSNRNSKLAGKLSPLIGKLSKLK VLSLPFHELRGEIPTEIWGLRELEVLNLEGNLISSMEFQFPSTSGELRKKLRVLNMGFNRIRGPIPGSISRFDRLEVLNLAGNQLNGTVPTSLGNCHQLK MIFLRSNRLTGRIPSEFGRLRQLRVLDLSKNKLTGPFPRSLFRKCSEMHCLIVNVRSQVSSLAVTSSSSNVRRTLSAAGQVSLRYALPENRTEIHVESSS TTARNDGMRPIEIASVVSASAIVSVLILLVIMFFYLRKRAPNARVVQFSEPKEIIEFVDVGVPLLYEEIVLATENFSMRNCIGNGGFGATYKAEIAPETL LAIKRLAIGRFNQGVRQFHAEIKALGTMKHPNLVTLLGFHASESEMFLIYNYLPGGNLESFIRERSASSFRWKTLHKIAMDIARALTYCHDQRILHRDVK PSNILLDDSHNAYLSDFGLARLLGTSETHATTGVAGTFGYVAPEYAMTCRVSEKADVYSYGVVLLELISDKKALDPSFSSQENGFNIVSWACMLLRNGRA KEVFAAGLWELSPHDDLVEMLHLAVTCTDETLSTRPTMKQVLHRLRLIRPGSN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G02130		TOAD2, RPK2, CL...	TOADSTOOL 2, clv3 peptide inse...		Lus10026666 [exp]	0	1
AT2G46950		CYP709B2	"cytochrome P450, family 709, ...		Lus10025756 [exp]	1.7	0.9273
AT1G68765		IDA	INFLORESCENCE DEFICIENT IN ABS...		Lus10034260 [exp]	4.6	0.8965
AT4G20820			FAD-binding Berberine family p...		Lus10032943 [exp]	6.0	0.9094
AT3G48990			AMP-dependent synthetase and l...		Lus10027477 [exp]	11.8	0.9060
AT1G80300		ATNTT1	nucleotide transporter 1 (.1)		Lus10025755 [exp]	12.5	0.9216
AT4G17030		ATHEXPBETA3.1, ...	expansin-like B1 (.1)		Lus10011013 [exp]	22.5	0.8578
AT5G62790		PDE129, DXR	PIGMENT-DEFECTIVE EMBRYO 129, ...		Lus10002379 [exp]	26.9	0.9167
AT5G61890	AP2_ERF		Integrase-type DNA-binding sup...		Lus10028679 [exp]	30.7	0.9118
AT1G50420	GRAS	SCL-3, SCL3	scarecrow-like 3 (.1)		Lus10009717 [exp]	31.1	0.8887
AT3G19615			unknown protein		Lus10042265 [exp]	32.0	0.9038

Compare expression of checked genes

Lus10026666 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.