Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13740 199 / 3e-61 AFP2 ABI five binding protein 2 (.1) AT1G69260 184 / 1e-55 AFP1 ABI five binding protein (.1) AT3G29575 127 / 5e-35 AFP3 ABI five binding protein 3 (.1.3.4) AT3G02140 96 / 2e-22 AFP4, TMAC2 TWO OR MORE ABRES-CONTAINING GENE 2, ABI FIVE BINDING PROTEIN 4, AFP2 (ABI five-binding protein 2) family protein (.1) AT3G07250 91 / 7e-20 nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein (.1) AT4G28910 66 / 8e-12 NINJA novel interactor of JAZ (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004645 [exp] 467 / 1e-166 AT1G13740 233 / 2e-74 ABI five binding protein 2 (.1) Lus10037084 [exp] 187 / 1e-57 AT1G13740 197 / 2e-61 ABI five binding protein 2 (.1) Lus10036898 [exp] 180 / 1e-54 AT1G69260 200 / 2e-62 ABI five binding protein (.1) Lus10022764 [exp] 101 / 5e-24 AT3G29575 113 / 2e-29 ABI five binding protein 3 (.1.3.4) Lus10003145 [exp] 100 / 7e-24 AT3G29575 112 / 4e-29 ABI five binding protein 3 (.1.3.4) Lus10043236 [exp] 64 / 7e-11 AT4G28910 265 / 9e-84 novel interactor of JAZ (.1.2.3) Lus10011116 [exp] 62 / 2e-10 AT4G28910 259 / 1e-81 novel interactor of JAZ (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G157900 [exp] 248 / 6e-80 AT1G13740 229 / 1e-72 ABI five binding protein 2 (.1) Potri.008G096500 [exp] 164 / 9e-48 AT1G13740 240 / 6e-77 ABI five binding protein 2 (.1) Potri.017G094500 [exp] 116 / 2e-29 AT1G13740 169 / 1e-49 ABI five binding protein 2 (.1) Potri.004G120600 [exp] 115 / 4e-29 AT1G13740 176 / 5e-52 ABI five binding protein 2 (.1) Potri.006G162900 [exp] 68 / 2e-12 AT4G28910 307 / 1e-99 novel interactor of JAZ (.1.2.3) Potri.018G085100 [exp] 65 / 2e-11 AT4G28910 324 / 3e-106 novel interactor of JAZ (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07897 [flax] [poplar] EAR Ethylene-responsive binding factor-associated repression
Representative CDS sequence Show only first row Show all	>Lus10026667 pacid=23164402 polypeptide=Lus10026667 locus=Lus10026667.g ID=Lus10026667.BGIv1.0 annot-version=v1.0 ATGGGGGAAGCAGAAGGAAGCAGTAGTAGCAGCAGGAGAGCGACGATGGAGAGCTTGTCACTTGAGATCAACAGGTACCCACGGGATCTGCTGACGAGAT TCATCTCGTCAGCAGCGGGGGAGAAGCGGAGAGTTCGAACTAGGGAGGAAGAAGAAGAGGAGGAAGAAAGGGAAGCTGACGAAATTGAGCTGAATTTAGG GCTGTCACTCGGCGGCAGATTCGGGGTTGATAAGACGAAGCTGGCAAGATCGTCATCGATCGCCGGGCCGATACCGGAGGCGTTTTTCAAGGAGAGTGAC TCAGCATTGGGTGGCGGCGTGGGGTCGGATTCATATCATCATCATCCTAATCAGCAGCTGATGAGGACTTCTTCTTTGCCGACGGAGACGGAGGAGGAGT GGAGGAAGCGGAAGGAAATGCAGACTTTGAGGAGGATGGAGGCCAAACGGCGCCGTAATGAGAAGCAGAGGAACTCTGATGAGAAGTTGAGTAGAGGTGG GAGTTGGGTTGTTAGTAGGCCGCAAGGGAGCTTGAATAGCTGCAGAAGCAGGGAAGGTTCACAGGGCTCTATTGAGTCTTCTCATGGCGGTGGGAGTTCA TCTGGTGCTGCTCCTGCTCTTGTTCAAGGATCAGGCAGTGGTGGCGAATCAAGGAGCCCCGGTCTTAACGCATCCTCATCGCAAGACCAATGCAACCATC CCCCGGGACCCCCTTCATCCTCAAAGCCCACCGCCACTGCAGAGAAGCCCGAAAACAACAAAAGAGCGAGGGATATCGGGACGAGCGCCATGGAAGACAT GCCTTGCGTATTCACGATAGGCGATGGCCCCAACGGGAGACGAGTAGAAGGCATCCTCTATAAATACGGCCGCGGAGAGGAAGTGAGGATAATGTGTGTA TGCCACGGCAGCTTCCTCTCGCCTGCCGAATTCGTCAAGCACGCCGGTGGCAGCAATGTCGATCACCCTCTTAAGCATATAGTTGTTAACCCTGCAGGCC CTTCCTTTCTATGA
AA sequence Show only first row Show all	>Lus10026667 pacid=23164402 polypeptide=Lus10026667 locus=Lus10026667.g ID=Lus10026667.BGIv1.0 annot-version=v1.0 MGEAEGSSSSSRRATMESLSLEINRYPRDLLTRFISSAAGEKRRVRTREEEEEEEEREADEIELNLGLSLGGRFGVDKTKLARSSSIAGPIPEAFFKESD SALGGGVGSDSYHHHPNQQLMRTSSLPTETEEEWRKRKEMQTLRRMEAKRRRNEKQRNSDEKLSRGGSWVVSRPQGSLNSCRSREGSQGSIESSHGGGSS SGAAPALVQGSGSGGESRSPGLNASSSQDQCNHPPGPPSSSKPTATAEKPENNKRARDIGTSAMEDMPCVFTIGDGPNGRRVEGILYKYGRGEEVRIMCV CHGSFLSPAEFVKHAGGSNVDHPLKHIVVNPAGPSFL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G13740		AFP2	ABI five binding protein 2 (.1...		Lus10026667 [exp]	0	1
AT5G43180			Protein of unknown function, D...		Lus10025217 [exp]	1.4	0.8413
AT4G17080			Histone H3 K4-specific methylt...		Lus10042858 [exp]	9.8	0.7818
AT3G54680			proteophosphoglycan-related (....		Lus10033654 [exp]	11.8	0.7373
AT4G38690			PLC-like phosphodiesterases su...		Lus10034483 [exp]	13.4	0.7614
AT5G52660	MYB		Homeodomain-like superfamily p...		Lus10036392 [exp]	13.5	0.7591
AT4G11660	HSF	AT-HSFB2B, HSFB...	HEAT SHOCK TRANSCRIPTION FACTO...		Lus10008007 [exp]	15.0	0.7964
AT5G60660		PIP2F, PIP2;4	plasma membrane intrinsic prot...		Lus10026504 [exp]	16.1	0.7490
AT3G57990			unknown protein		Lus10012013 [exp]	16.4	0.7547
AT2G39570		ACR9	ACT domain repeats 9, ACT doma...		Lus10005157 [exp]	21.4	0.7621
AT3G27250			unknown protein		Lus10032077 [exp]	22.7	0.7707

Compare expression of checked genes

Lus10026667 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.