Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60980 127 / 4e-32 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) AT3G25150 125 / 5e-31 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) AT1G13730 112 / 1e-26 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1) AT2G03640 108 / 2e-25 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain AT1G69250 103 / 7e-24 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) AT5G48650 100 / 2e-22 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1) AT5G43960 67 / 7e-12 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) AT3G07250 68 / 8e-12 nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein (.1) AT3G55540 60 / 9e-10 nuclear transport factor 2 (NTF2) family protein (.1) AT1G27970 50 / 2e-07 NTF2B nuclear transport factor 2B (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004644 [exp] 593 / 0 AT2G03640 253 / 2e-79 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain Lus10036918 [exp] 365 / 5e-122 AT2G03640 250 / 4e-78 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain Lus10037066 [exp] 358 / 4e-119 AT2G03640 248 / 2e-77 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain Lus10022765 [exp] 129 / 2e-32 AT3G25150 408 / 1e-138 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) Lus10025906 [exp] 127 / 6e-31 AT3G25150 363 / 4e-118 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) Lus10003144 [exp] 125 / 7e-31 AT3G25150 385 / 2e-129 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) Lus10023722 [exp] 80 / 1e-15 AT5G43960 266 / 2e-83 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) Lus10022873 [exp] 78 / 3e-15 AT5G43960 377 / 1e-127 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) Lus10014469 [exp] 75 / 3e-14 AT5G43960 156 / 4e-43 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G096700 [exp] 271 / 4e-86 AT2G03640 219 / 3e-66 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain Potri.010G157800 [exp] 169 / 9e-47 AT1G13730 219 / 4e-66 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1) Potri.017G094600 [exp] 149 / 6e-40 AT5G60980 286 / 6e-92 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) Potri.015G058700 [exp] 142 / 3e-37 AT5G60980 382 / 9e-129 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) Potri.002G246600 [exp] 129 / 2e-32 AT3G25150 374 / 8e-125 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) Potri.010G065500 [exp] 86 / 6e-18 AT5G43960 310 / 3e-101 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) Potri.002G257000 [exp] 82 / 1e-16 AT5G43960 402 / 3e-137 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) Potri.014G192900 [exp] 75 / 3e-14 AT5G43960 392 / 3e-133 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) Potri.011G025500 [exp] 58 / 6e-10 AT1G11570 171 / 5e-56 NTF2-like (.1.2) Potri.003G170800 [exp] 53 / 2e-08 AT1G27970 230 / 1e-79 nuclear transport factor 2B (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) CL0051 [flax] [poplar] NTF2 PF02136 [flax] [poplar] NTF2 Nuclear transport factor 2 (NTF2) domain
Representative CDS sequence Show only first row Show all	>Lus10026668 pacid=23164286 polypeptide=Lus10026668 locus=Lus10026668.g ID=Lus10026668.BGIv1.0 annot-version=v1.0 ATGGCGACCGAAGACTCCGTTCCCAATGCACAACTGGTCGGGAACGCCTTTGTGGAGCAGTACTACAACATGCTCTCGAGAGCACCGGAGAATGTTCACA GGTTTTATCAGGACTCAAGTGTCATGAGCAGGCCGAGTTCAGATGGCTCAATGTCCTCAGTCTCAACGATGCAGGGGATTAACGAGCTGATCGTTGCGTT GGAGTACAAAAACTGCGAGGTCCAGATACTGACAGCCGACGCACAGAAATCCTTCGGCGAAGGAGTCATTGTTCTGGTGACCGGTTTCCTGACCGGAAAG GACGAGATAAGAAGAAAATTCACCGAGTTGTTCTTCTTGGCTCCTCAAGAAGACGGTGGGTTCTTTGTCCTCAATGATGTTCTGAGGTACGTTGACGAAG AAGAATTGGCTGATGTAGAAGTCATTGATGCCGTTGATGCTGATGTTGCTACTGCTGCTCCAATCGCTCCCCTTACCCCCGAACCAGAGCCAACTCCTGC TGCGGAGGAAGCTCCAGCCACTTTGGTGGCCGAGGACACGATCCAACCTAGTAACGATGAGAGTCTTCCGCTCGAAAATGGCGACATTGCCATTGCTGAG AAGGAGTTTGTACCGAGTAATGTAATAACCGAGACGCCACAAGGCGATGCTGTAGTTGCAAAAACTCGGGAGGAAGATGTACAACAAGTTTCTGAGACGG CTGCTCCTATTTCTCAGGAAGACGCTCCTAAAAAGTCCTATGCTGCAATTGTGCGTATATTCGTCGCGAATGCATTGAACCTCAAGGCTCAACCTTTCCA GCAGAGAGTTTCACCGGCAAAACCAGTGCTTCGTGCTACTGCTCCTGCTCCTGTGGCCGTAGCTGCACCAACAGCCGAGGCAGTACCGGCTCCTCGTCCT GCGAGAAATAATTCGGTCGAAAGAACAGTGAAGGGTCACTCCATCTTCGTCGCAAATCTTCCGATGGACGCGACTGCTGACCAGCTGATCGAGACTTTCG GCAAATTCGGCCCCATCAAACCGACAGGAGTCCAAGTCAGAAGTTACAAGCAAGAGAGGAACTGTTTTGGATTTGTCGAGTTCGAAACAGCTGAAGCCGT CGAGAATGCCCTTCAGGTCGCAACCATCATGATTGGAAACCGCGAAGCTCATATCGAAAAGAAGAAAGCCGGTGGCGAAGGAGGCAAGTTCCCCCCTAGA AGGGGCGGATTCAGGAACGACGGCTTCAGAGGCGGCCGTGGTGGTGGCGGTGGCTATGCCGGAGGTCGCGGTGGTGGCAGCTACGTCAAGAATGACTTCG ACGGAAACTACGTCAGAGGAGGTGGTCGCAATGGGGAGAAAGTTTATCAGAACGGAGGGGGAAGAGGAGGACGCCAATCCAGACCGACACAGCCACCAGC CAACGCTGCTCCAACCGAAGCCGGAAAGAATTAG
AA sequence Show only first row Show all	>Lus10026668 pacid=23164286 polypeptide=Lus10026668 locus=Lus10026668.g ID=Lus10026668.BGIv1.0 annot-version=v1.0 MATEDSVPNAQLVGNAFVEQYYNMLSRAPENVHRFYQDSSVMSRPSSDGSMSSVSTMQGINELIVALEYKNCEVQILTADAQKSFGEGVIVLVTGFLTGK DEIRRKFTELFFLAPQEDGGFFVLNDVLRYVDEEELADVEVIDAVDADVATAAPIAPLTPEPEPTPAAEEAPATLVAEDTIQPSNDESLPLENGDIAIAE KEFVPSNVITETPQGDAVVAKTREEDVQQVSETAAPISQEDAPKKSYAAIVRIFVANALNLKAQPFQQRVSPAKPVLRATAPAPVAVAAPTAEAVPAPRP ARNNSVERTVKGHSIFVANLPMDATADQLIETFGKFGPIKPTGVQVRSYKQERNCFGFVEFETAEAVENALQVATIMIGNREAHIEKKKAGGEGGKFPPR RGGFRNDGFRGGRGGGGGYAGGRGGGSYVKNDFDGNYVRGGGRNGEKVYQNGGGRGGRQSRPTQPPANAAPTEAGKN

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G03640			Nuclear transport factor 2 (NT...		Lus10026668 [exp]	0	1
AT4G19210		ABCE2, ATRLI2	ARABIDOPSIS THALIANA RNASE L I...		Lus10033309 [exp]	2.4	0.8409
AT3G19760		EIF4A-III	eukaryotic initiation factor 4...		Lus10017407 [exp]	13.3	0.7582
AT4G04930		DES-1-LIKE	fatty acid desaturase family p...		Lus10018485 [exp]	14.0	0.7697
					Lus10006631 [exp]	17.0	0.7126
AT2G38040		CAC3	acetyl Co-enzyme a carboxylase...		Lus10017184 [exp]	20.3	0.7634
AT2G03820			nonsense-mediated mRNA decay N...		Lus10023975 [exp]	21.8	0.6977
AT1G72550			tRNA synthetase beta subunit f...		Lus10020531 [exp]	22.6	0.7320
AT3G52525	OFP	ATOFP6, OFP6	ARABIDOPSIS THALIANA OVATE FAM...		Lus10016978 [exp]	27.4	0.7508
AT4G19006			Proteasome component (PCI) dom...		Lus10010423 [exp]	27.9	0.7556
AT5G37055		ATSWC6, SEF	SERRATED LEAVES AND EARLY FLOW...		Lus10026399 [exp]	29.9	0.6861

Compare expression of checked genes

Lus10026668 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.